PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G441400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 26874 Da PI: 8.0265 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114 | 1.6e-35 | 23 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.kkvkaeek.ewyfFskrdkky.atgkrknratksgyWkatg 87 lp GfrF+Ptdeel+ +yL++k+ + +l++ +i+++d+ +++PwdL p +++ ++ + e +fF+ +++ ++g + ra+ +g W+ +g Sevir.5G441400.1.p 23 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDADLARLHPWDLlPpAAAGGDADgERFFFHLPATRCwRKGGGAARAAGTGLWRPSG 112 699***************************.99**************64344333333477888876665515799*************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+k v+s ++ vg+k+tLvfy+gr + + +tdW mheyrl Sevir.5G441400.1.p 113 KEKLVVSPrCKRPVGTKRTLVFYRGRGRAAARTDWAMHEYRL 154 ******9877889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-46 | 19 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.785 | 23 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-21 | 24 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEGRPAGAWR VQGPAGAPVA AGLPIGFRFR PTDEELLLHY LRRKALACPL PAGIIPDADL 60 ARLHPWDLLP PAAAGGDADG ERFFFHLPAT RCWRKGGGAA RAAGTGLWRP SGKEKLVVSP 120 RCKRPVGTKR TLVFYRGRGR AAARTDWAMH EYRLLPSGLH PFHGCAAAGN APTAHVSCHG 180 AAADWVVCRI FKRTKPAAHR GQEDDDAEEP SSPSSASSCV TDTSEAGDQE QDGDDEESSS 240 SSSNGGSSCS VASN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-28 | 23 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-28 | 23 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-28 | 23 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-28 | 23 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-28 | 23 | 197 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-28 | 23 | 197 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G441400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 1e-124 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971124.1 | 0.0 | NAC domain-containing protein 83-like isoform X1 | ||||
TrEMBL | A0A368RFD3 | 0.0 | A0A368RFD3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb03721.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 3e-29 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G441400.1.p |