PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G427700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 27840.6 Da PI: 4.6562 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 234 | 257 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C+k+F + L++H + H Sevir.5G427700.2.p 234 HACKSCSKTFGSDKALESHKKAkH 257 67*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.512 | 234 | 259 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-5 | 234 | 258 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 236 | 257 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEFWGEEVKP GAKVSCRADE GYVIHLSQAA LGETKKGSEN VVVSIQVDDK KLVLGTLSVD 60 KHPQIMCDLI FEDDFEISHS SKTASVFLCG YKSPIPIFEP DSGDDEISSD EELETEDIPI 120 KNDEINDSEM SEDSDEETSS GADLTGDSED ETDDSEEQTP TPKKPEVVGK KRATEAVASS 180 GKKAKVEPSG DKKGVHVSTP HPAKQASKTP AEKSGKTPAT DKKSKDKSPK SGSHACKSCS 240 KTFGSDKALE SHKKAKHEA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G427700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970994.1 | 1e-165 | histone deacetylase HDT2 isoform X2 | ||||
TrEMBL | A0A368REV5 | 1e-164 | A0A368REV5_SETIT; Uncharacterized protein | ||||
STRING | Si004270m | 1e-153 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 4e-28 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G427700.2.p |