PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G425100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 662aa    MW: 72619.3 Da    PI: 4.755
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G425100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-1386173197
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffkv+    +++   + +p +fa+++ ++   +   + led  g +W+v+l  + ++g   ++ GWk+Fv ++ +  g+f+vF+ + rs f
  Sevir.5G425100.1.p  86 FFKVM--MGYFSD-DMDIPPPFARTIlDLA--G-SNIYLEDAFGFRWRVRL--CFSDGVLSFGHGWKNFVLDHAVSCGEFLVFRQIARSVF 168
                         67777..445555.5***********6333..3.37***************..88999999***********************9888888 PP

                         ..EEEEE CS
                  B3  91 elvvkvf 97 
                           +v++f
  Sevir.5G425100.1.p 169 --TVQMF 173
                         ..77766 PP
2B332.71.3e-105926582997
                         -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         kk++ k ++l+d+  r W v +  + +++   + +GW + +++n+L+egD++ F+l+g+se ++ v ++
  Sevir.5G425100.1.p 592 KKQGRKVVILKDPCMRLWPVLY--QCTPRFSGFITGWVDICRENNLQEGDTCEFELSGNSELSFQVVLR 658
                         455667899*************..55665555667**********************999987777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-2183176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5983176IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-1883176IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-1784173No hitNo description
SMARTSM010196.2E-1386176IPR003340B3 DNA binding domain
PfamPF023629.7E-1186173IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348564659IPR003340B3 DNA binding domain
SMARTSM010190.0022567659IPR003340B3 DNA binding domain
CDDcd100172.22E-11578655No hitNo description
SuperFamilySSF1019364.51E-14585658IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-9592659IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-12593656IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MVELIGGGAL KKEPEEAVVE IDSEEEEAGK VVKRRRRRKK KACDPHQKRA CVDCTKRCAR  60
IHGRAASSSP SPSSSKARPL PAVPSFFKVM MGYFSDDMDI PPPFARTILD LAGSNIYLED  120
AFGFRWRVRL CFSDGVLSFG HGWKNFVLDH AVSCGEFLVF RQIARSVFTV QMFAPSAVER  180
LFLCERNKRQ SRKRKPRQKA SSPSIQAVKT SKNGVENRKK KQRTDHHSDL GPKDCQMPDH  240
VCLDDSDVPN SASEPKCSET SGGVPEVGVA EPQEDSEAPT RHECEGQEVL DGEAEIADDC  300
TIFEEKESEC NARVTEHLVS DATEIEHGEG LNLPTNADVI GPLAMMDLNE ENIDDIFLSA  360
DIYEFGTDVC NPEAFSVDLN MEGPITTAQT SGFSCLEDAS QNHHSSMGVG QSYVMPAETL  420
SCSENKEMTD ALETGSGYAC VAVHDIDINE LPATEPSPFA ENSSPPADIE VHSGEFALSG  480
CNQGEQNEGF VRAQTSVKKD KQQDGQGDRQ ASTGQNTAEV ISSGIMLHEH PHLSQNLHQT  540
EDKSEGLQSE IFESGGVLAL AAACSKFCIA VPAPGQTWLE LPNRLPVIPR TKKQGRKVVI  600
LKDPCMRLWP VLYQCTPRFS GFITGWVDIC RENNLQEGDT CEFELSGNSE LSFQVVLRSL  660
Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237KRRRRR
23240KRRRRRKKK
33440RRRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G425100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972298.10.0B3 domain-containing protein Os01g0905400 isoform X1
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A368REZ50.0A0A368REZ5_SETIT; Uncharacterized protein
STRINGSi004140m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]