PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G411900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 195aa    MW: 20219.3 Da    PI: 9.752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G411900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-161766255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        gykGVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  Sevir.5G411900.1.p 17 GYKGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 66
                        8*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-221786IPR001471AP2/ERF domain
PROSITE profilePS5103220.5081786IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-151767IPR016177DNA-binding domain
SMARTSM003801.3E-201792IPR001471AP2/ERF domain
PfamPF008475.4E-91766IPR001471AP2/ERF domain
PRINTSPR003673.4E-81829IPR001471AP2/ERF domain
CDDcd000181.32E-161887No hitNo description
PRINTSPR003673.4E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRRAERGDEA EAERRRGYKG VRRRRWGKWV SEIRVPGTRE RLWLGSYATP EAAAVAHDTA  60
VYFLRGGAGA GPGVAAGGDV AALNFPERAA AAYGAGAGAG AARLSPRSVQ RVASDAGMAA  120
DAQLVTARDS APAPAHRYAA DRTGIGGGAS ARPRDQDDDA YASRAHASSN STGGSREQQL  180
VTGEISVDDI EILM*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G411900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970828.11e-132ethylene-responsive transcription factor ERF020
SwissprotQ9C9I82e-30ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A368RE331e-130A0A368RE33_SETIT; Uncharacterized protein
STRINGPavir.J06813.1.p2e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.17e-19ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]