PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G408300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 419aa MW: 46096.4 Da PI: 4.4844 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.2 | 2e-50 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtd el ++yLk+k++gkkl + e+i+ev++yk+ PwdLp k +vk+++ ewyfF++rdkkyatg+r+nr t +g+Wk+tg+d Sevir.5G408300.2.p 6 LPPGFRFHPTDVELCSYYLKRKITGKKLLV-EAIAEVELYKYSPWDLPdKsCVKSRDMEWYFFCPRDKKYATGSRANRLTPNGFWKSTGND 95 79*************************999.89**************96358899999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++ vg+kktLvf++g+ap+g +tdWvm eyr+ Sevir.5G408300.2.p 96 RTIVL-NTRIVGMKKTLVFHEGKAPRGDRTDWVMYEYRM 133 *****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-60 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.434 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-26 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MAQTSLPPGF RFHPTDVELC SYYLKRKITG KKLLVEAIAE VELYKYSPWD LPDKSCVKSR 60 DMEWYFFCPR DKKYATGSRA NRLTPNGFWK STGNDRTIVL NTRIVGMKKT LVFHEGKAPR 120 GDRTDWVMYE YRMEDNELDV GGFSKDAYVL CKIFKKSGPG PRIGEQYGAT FNEEEWDNIN 180 TETAFPLVPC PSSEVVGATN EPPFQHTVAS TSSVVSEPHV LTVASADGLP FEFSTSSITA 240 TDELQRHRLR HNGSEMVTAN CSSDALDACD PTEFGGITSE ETDKWVRFLN DSTERDGGAS 300 EKLAGLPAIS EAQAQALEMN SDYCYHELVR LVESGGVSTA NDLSPGYVNT ECLNTPMVSG 360 LGAGDDYLEI NDLFPLGETA SFELPAPETQ TLCGMTAPTQ QCGTPSHEHC TTTSEVEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-51 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G408300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM053568 | 0.0 | HM053568.1 Setaria italica NAC transcription factor gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970791.1 | 0.0 | NAC domain-containing protein 82 | ||||
Refseq | XP_004970792.1 | 0.0 | NAC domain-containing protein 82 | ||||
Refseq | XP_004970796.1 | 0.0 | NAC domain-containing protein 82 | ||||
Refseq | XP_012701858.1 | 0.0 | NAC domain-containing protein 82 | ||||
Refseq | XP_012701859.1 | 0.0 | NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 1e-78 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | K3XHI1 | 0.0 | K3XHI1_SETIT; Uncharacterized protein | ||||
STRING | Si001352m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 5e-81 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G408300.2.p |
Publications ? help Back to Top | |||
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