PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G408300.11.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 401aa    MW: 44001.6 Da    PI: 4.1445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G408300.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.24.4e-2927257128
                  NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ewyfF++rdkkyatg+r+nr t +g+Wk+tg+d++++  +++ vg+kktLvf++g+ap+g +tdWvm eyr+
  Sevir.5G408300.11.p   2 EWYFFCPRDKKYATGSRANRLTPNGFWKSTGNDRTIVL-NTRIVGMKKTLVFHEGKAPRGDRTDWVMYEYRM 72 
                          8*************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.267195IPR003441NAC domain
SuperFamilySSF1019417.19E-36295IPR003441NAC domain
PfamPF023652.3E-13372IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEWYFFCPRD KKYATGSRAN RLTPNGFWKS TGNDRTIVLN TRIVGMKKTL VFHEGKAPRG  60
DRTDWVMYEY RMEDNELDVG GFSKDAYVLC KIFKKSGPGP RIGEQYGATF NEEEWDNINT  120
ETAFPLVPCP SSEVVGATNE PPFQHTVAST SSVVSEPHVL TVASADGLPF EFSTSSITAT  180
DELQRHRLRH NGSEMVTANC SSDALDACDP TEFGGITSEE TDKWVRFLND STERDGGASE  240
KLAGLPAISE AQAQALEMNS DYCYHELVRL VESGGVSTAN DLSPGYVNTE CLNTPMVSGL  300
GAGDDYLEIN DLFPLGETAS FELPAPESQF PQYPLEQCPC NELNHPQYHD EGALAASLAA  360
DDFLPPISCS MPDISVDDVT CSTNLMWNDC SNSTVWYPFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-2829672166NO APICAL MERISTEM PROTEIN
1ut4_B6e-2829672166NO APICAL MERISTEM PROTEIN
1ut7_A6e-2829672166NO APICAL MERISTEM PROTEIN
1ut7_B6e-2829672166NO APICAL MERISTEM PROTEIN
4dul_A6e-2829672166NAC domain-containing protein 19
4dul_B6e-2829672166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G408300.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0535680.0HM053568.1 Setaria italica NAC transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970791.10.0NAC domain-containing protein 82
RefseqXP_004970792.10.0NAC domain-containing protein 82
RefseqXP_004970796.10.0NAC domain-containing protein 82
RefseqXP_012701858.10.0NAC domain-containing protein 82
RefseqXP_012701859.10.0NAC domain-containing protein 82
TrEMBLK3XHI10.0K3XHI1_SETIT; Uncharacterized protein
STRINGSi001352m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.45e-47NAC domain containing protein 82