PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G408300.10.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 39051.2 Da PI: 4.295 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.4 | 3.7e-29 | 2 | 72 | 57 | 128 |
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ewyfF++rdkkyatg+r+nr t +g+Wk+tg+d++++ +++ vg+kktLvf++g+ap+g +tdWvm eyr+ Sevir.5G408300.10.p 2 EWYFFCPRDKKYATGSRANRLTPNGFWKSTGNDRTIVL-NTRIVGMKKTLVFHEGKAPRGDRTDWVMYEYRM 72 8*************************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.267 | 1 | 95 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-36 | 2 | 95 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-13 | 3 | 72 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MEWYFFCPRD KKYATGSRAN RLTPNGFWKS TGNDRTIVLN TRIVGMKKTL VFHEGKAPRG 60 DRTDWVMYEY RMEDNELDVG GFSKDAYVLC KIFKKSGPGP RIGEQYGATF NEEEWDNINT 120 ETAFPLVPCP SSEVVGATNE PPFQHTVAST SSVVSEPHVL TVASADGLPF EFSTSSITAT 180 DELQRHRLRH NGSEMVTANC SSDALDACDP TEFGGITSEE TDKWVRFLND STERDGGASE 240 KLAGLPAISE AQAQALEMNS DYCYHELVRL VESGGVSTAN DLSPGYVNTE CLNTPMVSGL 300 GAGDDYLEIN DLFPLGETAS FELPAPETQT LCGMTAPTQQ CGTPSHEHCT TTSEVEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-28 | 2 | 96 | 72 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-28 | 2 | 96 | 72 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-28 | 2 | 96 | 72 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-28 | 2 | 96 | 72 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-28 | 2 | 96 | 72 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-28 | 2 | 96 | 72 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G408300.10.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM053568 | 0.0 | HM053568.1 Setaria italica NAC transcription factor gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970791.1 | 0.0 | NAC domain-containing protein 82 | ||||
Refseq | XP_004970792.1 | 0.0 | NAC domain-containing protein 82 | ||||
Refseq | XP_004970796.1 | 0.0 | NAC domain-containing protein 82 | ||||
Refseq | XP_012701858.1 | 0.0 | NAC domain-containing protein 82 | ||||
Refseq | XP_012701859.1 | 0.0 | NAC domain-containing protein 82 | ||||
TrEMBL | K3XHI1 | 0.0 | K3XHI1_SETIT; Uncharacterized protein | ||||
STRING | Si001352m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-47 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G408300.10.p |