PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G408300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 462aa    MW: 51046.8 Da    PI: 4.3151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G408300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.4e-5061331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd el ++yLk+k++gkkl + e+i+ev++yk+ PwdLp k +vk+++ ewyfF++rdkkyatg+r+nr t +g+Wk+tg+d
  Sevir.5G408300.1.p   6 LPPGFRFHPTDVELCSYYLKRKITGKKLLV-EAIAEVELYKYSPWDLPdKsCVKSRDMEWYFFCPRDKKYATGSRANRLTPNGFWKSTGND 95 
                         79*************************999.89**************96358899999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++  +++ vg+kktLvf++g+ap+g +tdWvm eyr+
  Sevir.5G408300.1.p  96 RTIVL-NTRIVGMKKTLVFHEGKAPRGDRTDWVMYEYRM 133
                         *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-603156IPR003441NAC domain
PROSITE profilePS5100556.4346156IPR003441NAC domain
PfamPF023651.2E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELC SYYLKRKITG KKLLVEAIAE VELYKYSPWD LPDKSCVKSR  60
DMEWYFFCPR DKKYATGSRA NRLTPNGFWK STGNDRTIVL NTRIVGMKKT LVFHEGKAPR  120
GDRTDWVMYE YRMEDNELDV GGFSKDAYVL CKIFKKSGPG PRIGEQYGAT FNEEEWDNIN  180
TETAFPLVPC PSSEVVGATN EPPFQHTVAS TSSVVSEPHV LTVASADGLP FEFSTSSITA  240
TDELQRHRLR HNGSEMVTAN CSSDALDACD PTEFGGITSE ETDKWVRFLN DSTERDGGAS  300
EKLAGLPAIS EAQAQALEMN SDYCYHELVR LVESGGVSTA NDLSPGYVNT ECLNTPMVSG  360
LGAGDDYLEI NDLFPLGETA SFELPAPESQ FPQYPLEQCP CNELNHPQYH DEGALAASLA  420
ADDFLPPISC SMPDISVDDV TCSTNLMWND CSNSTVWYPF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-50215711169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G408300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0535680.0HM053568.1 Setaria italica NAC transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970791.10.0NAC domain-containing protein 82
RefseqXP_004970792.10.0NAC domain-containing protein 82
RefseqXP_004970796.10.0NAC domain-containing protein 82
RefseqXP_012701858.10.0NAC domain-containing protein 82
RefseqXP_012701859.10.0NAC domain-containing protein 82
TrEMBLK3XHI10.0K3XHI1_SETIT; Uncharacterized protein
STRINGSi001352m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-80NAC domain containing protein 82