PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G399700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 345aa    MW: 35794.3 Da    PI: 8.323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G399700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-20117166255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Sevir.5G399700.2.p 117 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 166
                         7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.0E-33117175IPR001471AP2/ERF domain
PfamPF008471.1E-13117166IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22117175IPR016177DNA-binding domain
PROSITE profilePS5103225.686117174IPR001471AP2/ERF domain
SMARTSM003801.3E-36117180IPR001471AP2/ERF domain
PRINTSPR003671.1E-11118129IPR001471AP2/ERF domain
CDDcd000184.74E-15125176No hitNo description
PRINTSPR003671.1E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MPGLCAVTVS RTTTSNFSVP FSSAAFFYCF LLLLHSKNIS LHVGGDRGRS ISQLQLCNAI  60
FSCSATSHAH AKDVLGSEQG SDTQTSAAAM EQEHHSRSHA AAAALSGHEG PETPRRRYRG  120
VRQRPWGKWA AEIRDPHKAA RVWLGTFETA EAAARAYDEA ALRFRGSRAK LNFPEDARLH  180
PASTTPAAPA APASEPIAGA GAASTSPAGY HPGAAQGADY LRYQMLLQGA ARNQGTLLPF  240
YAGGGGGMSN PYGGGGGAPS NPYGGGGGGG NTSGFLGSYY SFPPSSVSVA TVPSSTSSAP  300
GYYYSSPHDT QQSESSAAAA EDWNWASSLI HWANSGYPTP PHTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23118174663ATERF1
3gcc_A2e-23118174663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G399700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914074e-98FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682219.10.0dehydration-responsive element-binding protein 1C
TrEMBLA0A368RDM10.0A0A368RDM1_SETIT; Uncharacterized protein
STRINGSi002010m1e-150(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-20ethylene response factor 110