PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G399700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 390aa    MW: 39600.9 Da    PI: 6.5104
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G399700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-20162211255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Sevir.5G399700.1.p 162 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 211
                         7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.686162219IPR001471AP2/ERF domain
PfamPF008471.3E-13162211IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-22162220IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-33162220IPR001471AP2/ERF domain
SMARTSM003801.3E-36162225IPR001471AP2/ERF domain
PRINTSPR003671.3E-11163174IPR001471AP2/ERF domain
CDDcd000183.28E-14170221No hitNo description
PRINTSPR003671.3E-11185201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MCFELADQRG PQHGGGGGWP AKQRAGGGQD DEGMAAMAAG GPGAAVMSEY YQAQELSTMV  60
SALTQVVAGG AGPWGEAPAS SSARAGTAPR GSAAPEQQAM HGGYAHEVGS YHGAPSPELA  120
GSEQGSDTQT SAAAMEQEHH SRSHAAAAAL SGHEGPETPR RRYRGVRQRP WGKWAAEIRD  180
PHKAARVWLG TFETAEAAAR AYDEAALRFR GSRAKLNFPE DARLHPASTT PAAPAAPASE  240
PIAGAGAAST SPAGYHPGAA QGADYLRYQM LLQGAARNQG TLLPFYAGGG GGMSNPYGGG  300
GGAPSNPYGG GGGGGNTSGF LGSYYSFPPS SVSVATVPSS TSSAPGYYYS SPHDTQQSES  360
SAAAAEDWNW ASSLIHWANS GYPTPPHTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23163219663ATERF1
3gcc_A4e-23163219663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G399700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914074e-98FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682219.11e-180dehydration-responsive element-binding protein 1C
TrEMBLK3XJD70.0K3XJD7_SETIT; Uncharacterized protein
STRINGSi002010m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-19ethylene response factor 110