PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G394700.4.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 523aa MW: 56261.2 Da PI: 6.3786

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G394700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.3	5.8e-12	212	242	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 +k err+++NReAAr+sR+RKka++++Le+ Sevir.5G394700.4.p 212 HDKTERRLAQNREAARKSRLRKKAYVQQLET 242 589**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-7	210	286	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-8	212	256	No hit	No description
PROSITE profile	PS50217	9.071	212	256	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.6E-9	213	243	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	214	257	No hit	No description
PROSITE pattern	PS00036	0	217	232	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.7E-28	295	368	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MVHGEESSWR MERAALPLNQ ALAYGVQAHA AAAAAPPSCF LDFQPAAAAA AYFGFGELEE 60 ALIHGGGGAS ANAGGGVDPG VIIKSDAPAQ TKPAAAGYLA GAGGGRPPTL EIFPSWPMRH 120 QQQLHSGNSQ SVGSTTDSSS AQNTMSQMEL VSPASPAPRQ EVMMVTTDDY SYKPGLAAAP 180 AAAPAPAPPS FQQHHPALPL HLHGGGGGGG DHDKTERRLA QNREAARKSR LRKKAYVQQL 240 ETSRIRLQQV EHELQRARSQ GLFVGGCSAA GDMSSGAAAF DMEYARWLDD DGKRLAELRG 300 GLQAHLDGNL GLIVEECVQH YDELFQLKAA LAHEDVFHLL TGGWATPAER CFFWMGGFRP 360 SELLKILIPQ LDPLTEQQLL GICNLQQSSE QAEEALAQGL HQLHQSLADT VAAGTLNDGA 420 AAPNYMSLMA VALEKLASLE SFYQQADNLR QQTLHQMRRI LTTRQAARCF LSIGEYYRRL 480 RALSNLWASR PRENFIGTES LSPTATELQV MHQQQQNQFS GF*

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MVHGEESSWR MERAALPLNQ ALAYGVQAHA AAAAAPPSCF LDFQPAAAAA AYFGFGELEE  60
ALIHGGGGAS ANAGGGVDPG VIIKSDAPAQ TKPAAAGYLA GAGGGRPPTL EIFPSWPMRH  120
QQQLHSGNSQ SVGSTTDSSS AQNTMSQMEL VSPASPAPRQ EVMMVTTDDY SYKPGLAAAP  180
AAAPAPAPPS FQQHHPALPL HLHGGGGGGG DHDKTERRLA QNREAARKSR LRKKAYVQQL  240
ETSRIRLQQV EHELQRARSQ GLFVGGCSAA GDMSSGAAAF DMEYARWLDD DGKRLAELRG  300
GLQAHLDGNL GLIVEECVQH YDELFQLKAA LAHEDVFHLL TGGWATPAER CFFWMGGFRP  360
SELLKILIPQ LDPLTEQQLL GICNLQQSSE QAEEALAQGL HQLHQSLADT VAAGTLNDGA  420
AAPNYMSLMA VALEKLASLE SFYQQADNLR QQTLHQMRRI LTTRQAARCF LSIGEYYRRL  480
RALSNLWASR PRENFIGTES LSPTATELQV MHQQQQNQFS GF*

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G394700.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701952.1	0.0	transcription factor LG2 isoform X3
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A368RDD5	0.0	A0A368RDD5_SETIT; Uncharacterized protein
STRING	Si000955m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-130	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G394700.4.p

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]