PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G387900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 406aa MW: 43332.1 Da PI: 5.4521 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 96 | 141 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v++lG ++W++Iar ++ gR++k+c++rw + Sevir.5G387900.1.p 96 RGPWSPEEDTVLSNLVEKLGARNWTLIARGIP-GRSGKSCRLRWCNQ 141 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 148 | 192 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +++ a++ +G++ W+ Ia+ + gRt++ +k++w++ Sevir.5G387900.1.p 148 RKPFTEEEDRIIIAAHAIHGNK-WACIAKLLD-GRTDNAIKNHWNST 192 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.271 | 91 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-30 | 94 | 189 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 95 | 144 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 96 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-26 | 97 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.07E-14 | 98 | 140 | No hit | No description |
PROSITE profile | PS51294 | 21.896 | 147 | 197 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-15 | 147 | 195 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 148 | 192 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-11 | 150 | 193 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 150 | 196 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MSAAPETAVS PAPQPEPPSD PPAVADAAHS NPPPMEVDTQ TLAEPQPQPQ PNPPSPPPSG 60 EDDDVVAVSG ASVGGDAADS AAASAAATAT AEERVRGPWS PEEDTVLSNL VEKLGARNWT 120 LIARGIPGRS GKSCRLRWCN QLDPQVKRKP FTEEEDRIII AAHAIHGNKW ACIAKLLDGR 180 TDNAIKNHWN STLRRRYCND GRCKHGGSVE RSTPEVSRAV SKEPWPSKDL SSFTAMDVRD 240 APVKTVPETS AGAWHVADQY YSTQAVDPPY LSRPAAKIGA FRPYNPGNAE PTQQETPSSV 300 FKFDSTLKAL TPESEVFKFA DPTYFAAEVP NKCGHGCCTA HGRPRKNSLL GPEFNEFEDH 360 PPILNSSFAS LVSEISSIAW MRSGMQSGDA SSLLQSAPPG ASLTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-40 | 95 | 196 | 6 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G387900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970585.1 | 0.0 | transcription factor MYB1 | ||||
TrEMBL | K3XIG4 | 0.0 | K3XIG4_SETIT; Uncharacterized protein | ||||
STRING | Si001686m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8990 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-76 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G387900.1.p |