PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G383200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 347aa    MW: 36377.3 Da    PI: 6.0992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G383200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31155211258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         +Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s++dp+++++tYeg H h
  Sevir.5G383200.1.p 155 SDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTDDPEMLIVTYEGPHLH 211
                         7******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-30151212IPR003657WRKY domain
SuperFamilySSF1182902.62E-26152213IPR003657WRKY domain
SMARTSM007741.0E-35154213IPR003657WRKY domain
PROSITE profilePS5081127.829155214IPR003657WRKY domain
PfamPF031064.5E-26156211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGDVLHPQAG PGDVAPLWPG EIDEQLITEL LSDESLLLGA LQQAPAGGDA EPCSRDNTGA  60
SSSPAAPAPC NSGGGGAERE EVLPQPEAVS RALCSVYTGP TIRDIEKALS TSRPYPWSSR  120
RYSTMHLGRF GAASRAAPES KYTTKVRSCG GKTPSDGYKW RKYGQKSIKN NPHPRSYYKC  180
TSSRCGAKKH VEKSTDDPEM LIVTYEGPHL HGPQPLFPRR QLASVDLSGA AAAAAKKQAR  240
TPSPAARASD DGGAWPPNDQ QMACDDDDAG ARGGRAATLP GSGRAEDAVP HGQQHLADSC  300
DDGSTASVPA PPPRAATALT CDSPPTTWSC PDFPFVWSPE ADPLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-211562111974Probable WRKY transcription factor 4
2lex_A7e-211562111974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G383200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970545.10.0WRKY transcription factor WRKY24 isoform X1
TrEMBLA0A368RD250.0A0A368RD25_SETIT; Uncharacterized protein
STRINGSb03g039550.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.19e-28WRKY DNA-binding protein 49