PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G381600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WOX
Protein Properties Length: 332aa    MW: 35192.6 Da    PI: 9.1643
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G381600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.8e-2042101357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          R+++tkeql +Le l+e   r+psae++++++++l    +++ ++V++WFqN++a++++
  Sevir.5G381600.1.p  42 ARWNPTKEQLAALEGLYEHgLRTPSAEQIKQITARLrehgHIEGKNVFYWFQNHKARQRQ 101
                         7*****************99**************************************96 PP
2Wus_type_Homeobox110.31.1e-3541103365
   Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ++RW+Pt+eQ+  Le ly++GlrtP++e+i++ita+L+e+G+ie+kNVfyWFQN+kaR+rqkq
  Sevir.5G381600.1.p  41 NARWNPTKEQLAALEGLYEHGLRTPSAEQIKQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 103
                         78***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.59237102IPR001356Homeobox domain
SMARTSM003899.9E-639106IPR001356Homeobox domain
SuperFamilySSF466891.58E-1242109IPR009057Homeodomain-like
PfamPF000463.2E-1842101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-842101IPR009057Homeodomain-like
CDDcd000863.49E-743103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEAAPQHGGA GVIDLEGSGS GGAPLSPPLS PASAAAAALA NARWNPTKEQ LAALEGLYEH  60
GLRTPSAEQI KQITARLREH GHIEGKNVFY WFQNHKARQR QKQKQDSFAY FTRLLRRPPP  120
LPMLVRPPGP LPYPHGRLPV PAPPAAAAAA CSSSNGGTHV MYRSPFYMPA APQAPAANAL  180
YYHPQHQHQV PASVMYPRME VAQDKMIPAA AQHNHHHHRH HPAAGAMYHA AAAGNNASTT  240
PMHVLHFPPA AAVDAGPSRE TLQLFPLQPT FLLPADKGRA AGGGASMAPA PSTASASFSG  300
ESESLEESPD SYSEALAVPF YDFFGLQSGG R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G381600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902351e-127AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBankBT0370091e-127BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBankEU9540621e-127EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBankKJ7283841e-127KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972245.20.0WUSCHEL-related homeobox 5, partial
SwissprotA2WWU77e-56WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR867e-56WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLA0A368RCZ40.0A0A368RCZ4_SETIT; Uncharacterized protein
STRINGSi004427m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-34WUSCHEL related homeobox 2