PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G367000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 263aa    MW: 29288 Da    PI: 5.5362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G367000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.82.8e-2071130358
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnh 58 
                         Dg+ WrKYGqK++k++e+pr Y+rC+++   +C + k +++++ +dp + e+tY+ eH++
  Sevir.5G367000.1.p  71 DGHLWRKYGQKKIKDAEYPRLYFRCSYRgdrQCLASKLLQQKNgDDPPLYEVTYTYEHTC 130
                         9**************************99999******9877637899**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-2160133IPR003657WRKY domain
SuperFamilySSF1182901.31E-2062133IPR003657WRKY domain
SMARTSM007747.3E-3069132IPR003657WRKY domain
PROSITE profilePS5081116.16871133IPR003657WRKY domain
PfamPF031063.9E-2171130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASPRMKTEQ SFEFGELSAQ DAVGSASESS YSPPGAVFGV SPPESSPRGG RNNRRRDRPS  60
WVKVTYTPYF DGHLWRKYGQ KKIKDAEYPR LYFRCSYRGD RQCLASKLLQ QKNGDDPPLY  120
EVTYTYEHTC GAPPVPFPDI VAEPPPASRE GLVLRFDSPG GHGDAQMQQQ QQGQYQPTSR  180
SPFMMLSFGS SSQAHDQQPA FHSDMEAGSS SLPNEGMPAA AANGDGGMFS TWDSFTYDFD  240
SHMHFGDHTH LPYNSNYDYD DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-14711301068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G367000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970386.10.0probable WRKY transcription factor 65
TrEMBLA0A368RCG40.0A0A368RCG4_SETIT; Uncharacterized protein
STRINGSi005138m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.15e-17WRKY DNA-binding protein 62