PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G365700.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WOX

Protein Properties

Length: 204aa MW: 22971.6 Da PI: 7.1368

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G365700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Sevir.5G365700.2.p 22 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 82 89***************99************************************97 PP
2	Wus_type_Homeobox	102	4.1e-33	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Sevir.5G365700.2.p 21 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 84 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.9E-18	17	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	18	83	IPR001356	Homeobox domain
SMART	SM00389	2.7E-14	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-19	21	86	IPR009057	Homeodomain-like
CDD	cd00086	3.49E-15	22	84	No hit	No description
Pfam	PF00046	2.0E-19	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MRFSNLYCDP LIIPGGHKIT ARQRWQPTPM QLQILENIFD QGNGTPSKQK IKEITAELSH 60 HGQISETNVY NWFQNRRARS KRKQAAALPN NAESEAEVDE DALTDKKPKS DRPLHENKAM 120 TMSIHNAERI SGMHHFDASD HDQIGGMMYG SSDNGMRSSG NPGQMSFYEN IMSNPRIDHF 180 PGKVESSRSF SHLQHGEGFD MFG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G365700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970378.1	1e-153	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	2e-98	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	K3XKT5	1e-152	K3XKT5_SETIT; Uncharacterized protein
STRING	Si002508m	1e-152	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-35	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Sevir.5G365700.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]