PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G365700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WOX
Protein Properties Length: 279aa    MW: 30905.5 Da    PI: 6.4483
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G365700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-2197157257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+++t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Sevir.5G365700.1.p  97 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 157
                         89*****************99**************************************97 PP
2Wus_type_Homeobox101.27.4e-3396159265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ar+RW Ptp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  Sevir.5G365700.1.p  96 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 159
                         789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1792163IPR009057Homeodomain-like
PROSITE profilePS5007114.993158IPR001356Homeobox domain
SMARTSM003892.7E-1495162IPR001356Homeobox domain
SuperFamilySSF466891.63E-1896161IPR009057Homeodomain-like
PfamPF000463.5E-1997157IPR001356Homeobox domain
CDDcd000861.12E-1497159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEWGDRAKAS AVAAAAAAAD ERAGGGGEGL GGYVKVMTDE QMEVLRKQIS IYATICEQLV  60
EMHRTLTEHQ DSIAGMRFSN LYCDPLIIPG GHKITARQRW QPTPMQLQIL ENIFDQGNGT  120
PSKQKIKEIT AELSHHGQIS ETNVYNWFQN RRARSKRKQA AALPNNAESE AEVDEDALTD  180
KKPKSDRPLH ENKAMTMSIH NAERISGMHH FDASDHDQIG GMMYGSSDNG MRSSGNPGQM  240
SFYENIMSNP RIDHFPGKVE SSRSFSHLQH GEGFDMFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G365700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970378.10.0WUSCHEL-related homeobox 8
SwissprotQ5QMM31e-132WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLK3XKT50.0K3XKT5_SETIT; Uncharacterized protein
STRINGSi002508m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-59WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]