PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G359100.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 474aa    MW: 51392.5 Da    PI: 6.6162
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G359100.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.24.1e-09188228545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         k  rr+++NReAAr+sR+RKk +i++Le    +L++  ++L
  Sevir.5G359100.5.p 188 KTLRRLAQNREAARKSRLRKKTYIQNLESSRLKLTQLEQEL 228
                         7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-7184247IPR004827Basic-leucine zipper domain
PfamPF077168.4E-6185230IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.197186230IPR004827Basic-leucine zipper domain
CDDcd147086.05E-22188240No hitNo description
SuperFamilySSF579595.94E-7188231No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-7189232No hitNo description
PROSITE patternPS000360191206IPR004827Basic-leucine zipper domain
PfamPF141447.3E-33270345IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MESRRGGSAA AAAAAAAEDA GGAMPSFGPP QHSIHTDMNS MQPSRVADFG ALAQSAGFRI  60
EDLANINTGT LFNLKTNTHT ISNNPLQFGN YGKPISPSHI NTTTAATAAA RIDPQSLEQQ  120
TGAQPNLVAL PTGNIENWGE SAMADSPMTD TSTDPDTDER NQMFEQGLVA GPTASDSSDK  180
SRDKLDQKTL RRLAQNREAA RKSRLRKKTY IQNLESSRLK LTQLEQELQR ARQQGIFIST  240
SGDQPQSTSG NGALAFDMEY ARWLEEHNKH VNELRAAVNA HAGDNDLRGI VDSIMAHYDE  300
IFRLKGVAAK ADVFHVLSGM WKTPAERCFM WLGGFRSSEL LKLLAGQLEP LTDQQLVGIS  360
NLQQSSQQAE DALSQGMEAL QQSLAETLAS GSLGPAGSSG NVASYMGQMA MAMGKLGTLE  420
NFLRQADNLR LQTLQQMQRI LTTRQSARAL LAISDYFSRL RALSSLWLAR PRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G359100.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344560.0BT034456.1 Zea mays full-length cDNA clone ZM_BFc0173A06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970302.10.0transcription factor TGAL1
RefseqXP_004970303.10.0transcription factor TGAL1
RefseqXP_012701256.10.0transcription factor TGAL1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLK3XHC10.0K3XHC1_SETIT; Uncharacterized protein
STRINGSi001292m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-140bZIP family protein