PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G359100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 474aa MW: 51392.5 Da PI: 6.6162 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.2 | 4.1e-09 | 188 | 228 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKk +i++Le +L++ ++L Sevir.5G359100.1.p 188 KTLRRLAQNREAARKSRLRKKTYIQNLESSRLKLTQLEQEL 228 7889************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-7 | 184 | 247 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 8.4E-6 | 185 | 230 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.197 | 186 | 230 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 6.05E-22 | 188 | 240 | No hit | No description |
SuperFamily | SSF57959 | 5.94E-7 | 188 | 231 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-7 | 189 | 232 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 191 | 206 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.3E-33 | 270 | 345 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MESRRGGSAA AAAAAAAEDA GGAMPSFGPP QHSIHTDMNS MQPSRVADFG ALAQSAGFRI 60 EDLANINTGT LFNLKTNTHT ISNNPLQFGN YGKPISPSHI NTTTAATAAA RIDPQSLEQQ 120 TGAQPNLVAL PTGNIENWGE SAMADSPMTD TSTDPDTDER NQMFEQGLVA GPTASDSSDK 180 SRDKLDQKTL RRLAQNREAA RKSRLRKKTY IQNLESSRLK LTQLEQELQR ARQQGIFIST 240 SGDQPQSTSG NGALAFDMEY ARWLEEHNKH VNELRAAVNA HAGDNDLRGI VDSIMAHYDE 300 IFRLKGVAAK ADVFHVLSGM WKTPAERCFM WLGGFRSSEL LKLLAGQLEP LTDQQLVGIS 360 NLQQSSQQAE DALSQGMEAL QQSLAETLAS GSLGPAGSSG NVASYMGQMA MAMGKLGTLE 420 NFLRQADNLR LQTLQQMQRI LTTRQSARAL LAISDYFSRL RALSSLWLAR PRE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00492 | DAP | Transfer from AT5G06950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G359100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034456 | 0.0 | BT034456.1 Zea mays full-length cDNA clone ZM_BFc0173A06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970302.1 | 0.0 | transcription factor TGAL1 | ||||
Refseq | XP_004970303.1 | 0.0 | transcription factor TGAL1 | ||||
Refseq | XP_012701256.1 | 0.0 | transcription factor TGAL1 | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | K3XHC1 | 0.0 | K3XHC1_SETIT; Uncharacterized protein | ||||
STRING | Si001292m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-140 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G359100.1.p |