PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G352900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 19442.8 Da PI: 8.7326 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 31 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ eAa a+++a++ l+g+ Sevir.5G352900.1.p 31 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 81 6********.**********883....5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.04E-22 | 31 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.944 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-34 | 31 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 31 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.97E-29 | 31 | 90 | No hit | No description |
Pfam | PF00847 | 1.1E-12 | 31 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDMDPTLGAV LSHGGAGGGA VGGGDGGGDA HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT 60 FDTPVEAALA YDRAARTLRG AKAKTNFPDH AGGGGRHRHQ QQHLHLARPF SRQPLPQAVP 120 FGGVDLDCPS PWHFVYLQPE AADTALPLAA TQPAAAPPPS TALELSTGQT RGGLPFDLNE 180 APSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 31 | 94 | 5 | 69 | ATERF1 |
3gcc_A | 2e-21 | 31 | 94 | 5 | 69 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G352900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 2e-83 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970252.1 | 1e-131 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | K3XMD0 | 1e-130 | K3XMD0_SETIT; Uncharacterized protein | ||||
STRING | Si003053m | 1e-130 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-32 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G352900.1.p |