PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G323800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 24636.7 Da PI: 10.1817 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.4e-20 | 159 | 210 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp + +r +lg+fgtaeeAa+a++ a+ +++g+ Sevir.5G323800.1.p 159 HYRGVRRRP-WGKYAAEIRDPAR---HgARLWLGTFGTAEEAAAAYDSAAFRMRGA 210 7********.**********943...24**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-31 | 158 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.65E-17 | 159 | 217 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-22 | 159 | 219 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-33 | 159 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-14 | 159 | 209 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.342 | 159 | 217 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 160 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 183 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPKGHTDHPR EQVVARHMSS TYMSLPLQRG SRDVATPAPP AGGDNAAHPY PRAVAGMDTS 60 LSLAGAGHGQ YLPLNENDSL DMVLFDVLRE ASGGGGGSAA PSVTTYQPLP ASSLLPPPLM 120 AIASSAARRG SCVGGVGCDN SRAAHPHAHA PKAAGTGRHY RGVRRRPWGK YAAEIRDPAR 180 HGARLWLGTF GTAEEAAAAY DSAAFRMRGA KALLNFPRSV AGCGATAAAK QAAGVTEAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-30 | 157 | 220 | 3 | 66 | ATERF1 |
3gcc_A | 2e-30 | 157 | 220 | 3 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G323800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727681 | 1e-94 | KJ727681.1 Zea mays clone pUT5609 AP2-EREBP transcription factor (EREB134) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969969.1 | 1e-171 | ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A368RAZ7 | 1e-170 | A0A368RAZ7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb03148.1.p | 2e-82 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-23 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G323800.1.p |