PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G310000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 266aa    MW: 28686.8 Da    PI: 9.7143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G310000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1032.6e-32371292103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k++++++d++++ +++w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv++++         weF+h+sF +g+ +
  Sevir.5G310000.1.p  37 FVAKTFHMVSDSATDAVVRWGGASNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDTDR---------WEFAHESFLRGQAH 118
                         9********************999******************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll  i rkk++
  Sevir.5G310000.1.p 119 LLPLIVRKKKK 129
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3428120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-4733126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-3134126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-163760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-2837126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-167587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1688100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGSECKEHLQ LHAGFGAGGG GLSPPQQQLQ AGAIAPFVAK TFHMVSDSAT DAVVRWGGAS  60
NTFLVLDPAA FSDYLLPSYF KHRNFASFVR QLNTYGFRKV DTDRWEFAHE SFLRGQAHLL  120
PLIVRKKKKA GGGGRELCEE GEEVRGTIRD VRRLREEQRG MEEELQAMDR RLRAAESRPG  180
QMMAFLAKLA DDPGVVLRAM LAKKEELAAG KGLPPTPLPV EAPGKRRRIG GAEAAGGAGE  240
AAAAELAQGR GAVPFPFSVL GQVFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-233412626129Heat shock factor protein 1
5d5v_B2e-233412626129Heat shock factor protein 1
5d5v_D2e-233412626129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G310000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9540420.0EU954042.1 Zea mays clone 1452946 heat shock factor protein HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969854.10.0heat stress transcription factor C-1b
SwissprotQ942D61e-130HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLK3XL070.0K3XL07_SETIT; Uncharacterized protein
STRINGSi002580m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]