PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.5G305800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22681.8 Da PI: 7.0473 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.7 | 7.2e-24 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs++gkly y Sevir.5G305800.1.p 9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSTSGKLYHYL 58 79*********************************************996 PP | |||||||
2 | K-box | 32.1 | 5e-12 | 72 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 y++++++++++ ++ + el+k+++ e +++e+R + +d e+ ++ L+ Le++Le ++ k+Rs K++ + +i +l + + qee Sevir.5G305800.1.p 72 YEAATHTKVWTDIRQERRAELEKVEQMCELMEKELRFMTVDDGEKYTVPSLELLEHNLEAAMHKVRSEKDRKIGGEITYLENIIRGRQEER 162 566778889***********************************************************************99999999888 PP K-box 92 kaLrkkl 98 L kl Sevir.5G305800.1.p 163 YGLCDKL 169 8887766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.581 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-28 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-13 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.913 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFST SGKLYHYLSP 60 TVPSVKDLVE RYEAATHTKV WTDIRQERRA ELEKVEQMCE LMEKELRFMT VDDGEKYTVP 120 SLELLEHNLE AAMHKVRSEK DRKIGGEITY LENIIRGRQE ERYGLCDKLA HSQALNNEEG 180 GSTSLSNGLE LKLGFN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.5G305800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU975046 | 0.0 | EU975046.1 Zea mays clone 465896 MADS-box transcription factor 32 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969809.1 | 1e-143 | MADS-box transcription factor 32 | ||||
Swissprot | Q8S151 | 1e-121 | MAD32_ORYSJ; MADS-box transcription factor 32 | ||||
TrEMBL | K3XM65 | 1e-142 | K3XM65_SETIT; Uncharacterized protein | ||||
STRING | Si002988m | 1e-143 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11923 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.2 | 3e-23 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.5G305800.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|