PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G303700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 30419.6 Da PI: 4.5513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.6e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l v+++G+ +W + +++ g++R++k+c++rw++yl Sevir.5G303700.1.p 14 RGPWSQEEDAVLRSFVERFGNAgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 39.5 | 1.3e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd l++ + G++ W+ Ia++++ gRt++++k++w++ Sevir.5G303700.1.p 69 GGFTDEEDSLILSLYGDIGSK-WSVIASRLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.283 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.67E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 18.954 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.11E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGRSPCCDKT KVKRGPWSQE EDAVLRSFVE RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPELRHGG FTDEEDSLIL SLYGDIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRYLAS 120 TGEGRPPSPP PPPPPPASDD DSQSRHDEPP PPTPPPLANL DDTEYTGGGA VDDDALLLKS 180 EQLYAELVGL IEQQSSSSAA TTPSSSSGTS SPTASSSGSC TGTTVWAPSM DVHDTTLLSE 240 SSSSLFDAYG AGDAFGAVYS FQDLLAASYD EITAVTQELQ YY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G303700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241370 | 1e-133 | AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969789.1 | 1e-159 | transcription factor MYB4 | ||||
TrEMBL | A0A368RAP1 | 1e-158 | A0A368RAP1_SETIT; Uncharacterized protein | ||||
STRING | Si004558m | 1e-154 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 6e-68 | myb domain protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G303700.1.p |