PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G300000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 23853 Da PI: 9.9416 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.7 | 1.7e-17 | 31 | 108 | 1 | 76 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 +fYn+YA++ GF++rk + ++++ ++e+++r+++Cs+eg+r+ + + +k+r++ra tr+gC+a+l v+ ++ g w Sevir.5G300000.1.p 31 EFYNDYAYHKGFNIRKGRVRYKTGTKEVIWRRLMCSCEGYRSVKYFErMDKKRQPRALTRCGCTARLDVEWSEsIGIW 108 6*****************************************998775789999***************987755666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-15 | 31 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEAGGYVSLE ETKEYKCIVD QTFTREEDFY EFYNDYAYHK GFNIRKGRVR YKTGTKEVIW 60 RRLMCSCEGY RSVKYFERMD KKRQPRALTR CGCTARLDVE WSESIGIWWT MNAKSAFPTE 120 MRTNTHVWTE QMDRYHSLRS KGNRALFKVS RSQGNDIWAF AGSFSAANQP GGTKVLDPVK 180 IVSKGAPRSN KRWKASHEFW ETV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G300000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700767.1 | 3e-75 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | K3YLN5 | 2e-69 | K3YLN5_SETIT; Uncharacterized protein | ||||
STRING | Si015159m | 4e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-09 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G300000.1.p |