PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.5G277100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 32979.1 Da PI: 8.4794 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEdell +v+ +G+g +W + +++ g++R++k+c++rw++yl Sevir.5G277100.1.p 14 RGPWSPEEDELLRSYVQNHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.2 | 6.9e-12 | 71 | 111 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T++Ed ++ + + G++ W+ Ia++++ gRt++++k++w++ Sevir.5G277100.1.p 71 YTEQEDRIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 69*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.083 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.85E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 14.57 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MGRAPCCDKT SVKRGPWSPE EDELLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTEQEDRIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAIAM 120 NQQQQDYYHH QRGSGGRGRR GAPQTQCASM HPSPASASSA VTTASPGDAA CSFGPMFSSP 180 TPLQAQAVLA RYDGAATAPL PPLQQQHQAS SLAQFSSAPP PQPAGASIIN SWAGGLAIDD 240 MFLPELLGVG DFPPGDLFGG GFAPLLQDRA SSLQELAACY FPNAQAAEVW AAADHVKPPA 300 AGLCHSLT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.5G277100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HF679431 | 0.0 | HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969571.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | K3XKC7 | 0.0 | K3XKC7_SETIT; Uncharacterized protein | ||||
STRING | Si002350m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49690.1 | 6e-70 | myb domain protein 84 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.5G277100.1.p |