PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G273400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 258aa    MW: 28837.1 Da    PI: 10.0458
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G273400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP68.58.3e-2266141371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse..........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +++Lr +++    + +k+e+ g++t+neva+e+ +e          d+kn+rRR+YD++NVL al++i+k +k+ei+w+g
  Sevir.5G273400.1.p  66 GWGLREYSKI---VSKKVETkGRTTYNEVADEICAElkltlngqefDEKNIRRRVYDAFNVLIALRVIAK-DKKEIKWMG 141
                         6899****99...99999999*************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.5E-8534256IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.0E-3363145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-2164141IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-1667142IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.7E-1868141IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144587.28E-24146245IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.94E-28148250No hitNo description
SMARTSM011388.4E-27148251IPR014889Transcription factor DP, C-terminal
PfamPF087813.3E-22149246IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAPPCGDAAA AAELTSLRIG DGAGLPPLPR RGGGGGGGNA SEREEEEGDK SKKARKEKAG  60
VQRIAGWGLR EYSKIVSKKV ETKGRTTYNE VADEICAELK LTLNGQEFDE KNIRRRVYDA  120
FNVLIALRVI AKDKKEIKWM GLSNFRYEKI KKLEEGHKEL MTRIKNKKKL LQEIEKQFDD  180
LQNIKFRNQV LQRPAESANG ICLPFLLVKA SRKARVEIEI SEDSKFAGFD FNCTPFTLHD  240
DVSILDGIRR NGMRRAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-2366142989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G273400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701631.10.0transcription factor-like protein DPB
TrEMBLA0A368R9H50.0A0A368R9H5_SETIT; Uncharacterized protein
STRINGSi003799m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.16e-57Transcription factor DP