PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G271900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 421aa    MW: 43909.6 Da    PI: 6.5915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G271900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.24.3e-25561875128
                 NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 
                         f+ hPtd elv+ yL++ ve+       +i+e+d+y ++P dL +      ++ +e+ wyfF++ ++k+ +gkrk r+++   g W++  k
  Sevir.5G271900.1.p  56 FQSHPTDLELVNSYLRPWVETGLKAG-PFIHEADVYAADPADLTRrfapaVAQDGERAWYFFTPLRHKSVRGKRKARTVAsgGGCWHNEAK 145
                         7779***************9988555.78**************84467755566888********************54423789****** PP

                 NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +k+v++   +++++g ++++ f k++  +  +t W+m e rl
  Sevir.5G271900.1.p 146 SKPVFTGinGKRQIGHRQSFSFVKKDGGSRLRTGWLMMELRL 187
                         *****98889999**********99999999*******9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.71252214IPR003441NAC domain
SuperFamilySSF1019417.72E-3353214IPR003441NAC domain
PfamPF023651.7E-1555187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MPQQVPRFHL QFGLSSPSPL PPPGPPRLPQ PAAAATAATA MVRSPSAASK PPCAAFQSHP  60
TDLELVNSYL RPWVETGLKA GPFIHEADVY AADPADLTRR FAPAVAQDGE RAWYFFTPLR  120
HKSVRGKRKA RTVASGGGCW HNEAKSKPVF TGINGKRQIG HRQSFSFVKK DGGSRLRTGW  180
LMMELRLLKD GAAGKEAQAE GALGNLVLCK VYRSPRNPEP SDPAPDPALK EEATAADDDD  240
ESSGATAEDD DDSSDAPEAT AAASGPTKKS DEEESSEATV AAPSRHSKAD DEISGAGAAA  300
AAPGRKEKAA GDEDSAETSA AAPPARKRKA PDDESSGAAA APAPAPKRSS GSPGAPAPPS  360
TELQCPHCGT HLVVTLKRPE TKSETEIAKD EPAPGASDAP PTRGDARGSS EKNLQFHHFL  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-125621219166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G271900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969524.20.0protein ATAF2
TrEMBLK3XIX70.0K3XIX7_SETIT; Uncharacterized protein
STRINGSi001850m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-17NAC family protein