PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G271800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 278aa    MW: 29700.2 Da    PI: 6.672
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G271800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.34.3e-21111433127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknra..tksgyWkat 86 
                         + f  hP+ e l+  yL+++v++ + e  e+i+e+d+y+  P dL +     +++ ++k wyfF+k + + +  +r +ra  t++g+W +t
  Sevir.5G271800.1.p  11 ATFTSHPSAEKLIESYLRARVRSGEKED-EFIHEADLYTKAPGDLTRhftaaTTSDGRKAWYFFTKLRFRGSCTDRVKRAvdTRDGTWCNT 100
                         56778*******************9777.89**************85456544444677**********999999****54489******* PP

                 NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                            ++v+s   +g  +g  +t+vf +++a + ++  Wvm e  
  Sevir.5G271800.1.p 101 KPAQPVHSGdgNGLRIGQSQTFVFVRKEADRQVHLGWVMVELC 143
                         *******98666667************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.9189158IPR003441NAC domain
SuperFamilySSF1019415.23E-2610158IPR003441NAC domain
PfamPF023651.7E-1111142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAGSPPKSPP ATFTSHPSAE KLIESYLRAR VRSGEKEDEF IHEADLYTKA PGDLTRHFTA  60
ATTSDGRKAW YFFTKLRFRG SCTDRVKRAV DTRDGTWCNT KPAQPVHSGD GNGLRIGQSQ  120
TFVFVRKEAD RQVHLGWVMV ELCLGASDPN ALCKVYRSKK SKADGGSPVA AMAGAPGSKE  180
ADDEASTAAG VEMPGREDEE EEIDAEAAAA RPMLKRKAGD KDCGAETAAA SPGREKAAVG  240
DSAVAATTGE FCVGWWASPG AAEEPNDPSK RKFYIIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G271800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972087.10.0NAC domain-containing protein 45-like
TrEMBLA0A368R9410.0A0A368R941_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2232157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-14NAC domain containing protein 47