PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G269000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HB-other

Protein Properties

Length: 1849aa MW: 205809 Da PI: 5.1933

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G269000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.8e-18	57	111	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k Sevir.5G269000.1.p 57 KRMMKTPYQLEVLEKTYAVEQYPSEAMRLELSEKIGLSDRQLQMWFCHRRLKDRK 111 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.15E-16	40	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-17	44	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.18	52	112	IPR001356	Homeobox domain
SMART	SM00389	2.6E-17	54	116	IPR001356	Homeobox domain
CDD	cd00086	1.15E-14	57	112	No hit	No description
Pfam	PF00046	7.8E-16	57	111	IPR001356	Homeobox domain
SMART	SM00571	7.9E-20	630	689	IPR018501	DDT domain
PROSITE profile	PS50827	16.153	630	689	IPR018501	DDT domain
Pfam	PF02791	3.3E-17	632	686	IPR018501	DDT domain
Pfam	PF05066	6.2E-16	806	874	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.5E-9	1030	1072	IPR028942	WHIM1 domain
Pfam	PF15613	4.3E-12	1209	1280	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1849 aa Download sequence Send to blast
MDATGAGGDG DGAGKAAPEA PAEAMTPPPA PAAPAPAPAS ASGAGVETSG SAEKPVKRMM 60 KTPYQLEVLE KTYAVEQYPS EAMRLELSEK IGLSDRQLQM WFCHRRLKDR KPPSKRQRRE 120 EEAALAPVMP PLPVLPTPAI PLASSDLMVG TPGMYNEPLH PAHSRRGAGR SSAVPRISMP 180 DIGRRYYEPT PIMMAQPVVP SVQLTPSELH VIHSVESQLG EPLREDGPVL GTDFDPVPPG 240 AFGAPIVPEQ QKQPVRSYDT KIFSRHDPKL LKASAFLPTM ETPFVPNSFT GKRKSTVGNP 300 PIVQPHVGSR AVHEYQFLPE QPSDTYERAS RSHYYDTPVE ISNSRISSLT SGSQLLHGSE 360 EAAPSYAFQG HTSGSGLLPQ PSRSQAFPAV PADHEMAQSN SNLNSVPVEG QFDISQVAAF 420 ENPLVSSERR VYHDEDASRV ERKRKHNEEA KIAKEVEAHE RRIRKELEKQ EMLNRKREEQ 480 RRKEMERLDR ERRKEEERLL RERQREEERF QREQRREHER MEKFLQKQSR RAEKQRQKEE 540 MRKEKEAARQ KAASERATAR RIAREYMELM EDERLELMEL AAQSKGLPST HLDSDTLQQL 600 DSFRGMLSQF PPQTVRLKVP FSIKPWIGSE DNVGKLLMVW RFLITFTDVL GLSPVTLDEF 660 VQSLHDYDSR LLGELHIALL KSIIKDIEDV ARTPSIALGV NPGGGHPQIV EGAYAWGFNI 720 RSWQRHLNLL TWPEILRQFA LSAGFGPQLK KRNVDDSYYR NDNEGHDGEN VISTLRNGSA 780 AVNAAALMKE RGYTHRRRSR HRLTPGTVKF AAFHVLSLEG SKGLTILEVA EKIQKSGLRD 840 LTTSKTPEAS IAAALSRDTK LFERTAPSTY CVKSPYRKDP ADSEAVLSAA REKIRAFQNV 900 LSDSEAEKEA DEAERDDDSE CDDNDDDPDG DDVNTEVEDD KDPLPAVKAQ DEVPITTEVG 960 DIKTEADSVG NALNSSSSFT KSAKGVPLPS LGKSIAADTG NESPLGASSA NHEVTPDNSE 1020 NTQIDESNQV EPWVRALAEG DYCDLSVEER LNALVALVGV ATEGNSIRGV LEERLELANA 1080 LKKQMWAEVQ LDKRRSKEEF ASRMQYNSYM GLKADMYQEN NATESTSTPA CNAYKENDGH 1140 MGTINNCEIL DQHSQGNAGS ISYERNGVGQ EMMATPDASS VQQYAYADKT RSQLKLYIGH 1200 RAEQLYVYRS LPLGHDRRGN RYWQFTTSAS PNDPGSGRIF FESKDGYWRV IDSEEAFDSL 1260 VAALDTRGSR EAQLHSMLQM IEPTFKEAIK RRGASIELST GRYPKNGATD MIRANCHSGS 1320 SNSTPFSVDS ATEYSDSFKV ELGRNDFEKT AISRRADAFL KWMWRECYNQ ELTCAMKYGV 1380 KRCSELLHSC NFCYQIYLAE ERHCSSCHKT FKSIYNFSEH TTQCEEKQRT DPNWKMQIVD 1440 YSVPIGMILL KLQLASIEAS VPSEALQPFW TDVYRKSWSV KLYATKSTAE VFQLLTVLEG 1500 AIRRDRLSSD FETTSECLNS QDVAPQNPLL PAGSASVLPW VPDTTAAVMV RMLDLDSAVS 1560 YTQNQKMERD GGGFMKFPSR YTVAKSKQET TPLEPPTGSD LYGGGRWLPG SGRRGRGRGS 1620 RGGSRGGRGR SRGGRVPRGV SSSSRVEFKD DGVASDKAPR KNARRGRARG RARGRGRRTV 1680 RSRQPSEGRA RSIPKANLLG SFSMLSSSKP ATVEESPRSS GADEWGLEAR MPYTEGDENS 1740 SGSQSEDNEE NGQPMDDDYE EQVPDYSIGY SSGSRPHGMM SMMDPESDEE DEDAEGDENA 1800 EEDDADHAVD DADIEMDEDD EIVDDGDGGE MNVDEDEDAT SYSSDYSE*

Sequence ? help Back to Top

Protein Sequence Length: 1849 aa Download sequence Send to blast

MDATGAGGDG DGAGKAAPEA PAEAMTPPPA PAAPAPAPAS ASGAGVETSG SAEKPVKRMM  60
KTPYQLEVLE KTYAVEQYPS EAMRLELSEK IGLSDRQLQM WFCHRRLKDR KPPSKRQRRE  120
EEAALAPVMP PLPVLPTPAI PLASSDLMVG TPGMYNEPLH PAHSRRGAGR SSAVPRISMP  180
DIGRRYYEPT PIMMAQPVVP SVQLTPSELH VIHSVESQLG EPLREDGPVL GTDFDPVPPG  240
AFGAPIVPEQ QKQPVRSYDT KIFSRHDPKL LKASAFLPTM ETPFVPNSFT GKRKSTVGNP  300
PIVQPHVGSR AVHEYQFLPE QPSDTYERAS RSHYYDTPVE ISNSRISSLT SGSQLLHGSE  360
EAAPSYAFQG HTSGSGLLPQ PSRSQAFPAV PADHEMAQSN SNLNSVPVEG QFDISQVAAF  420
ENPLVSSERR VYHDEDASRV ERKRKHNEEA KIAKEVEAHE RRIRKELEKQ EMLNRKREEQ  480
RRKEMERLDR ERRKEEERLL RERQREEERF QREQRREHER MEKFLQKQSR RAEKQRQKEE  540
MRKEKEAARQ KAASERATAR RIAREYMELM EDERLELMEL AAQSKGLPST HLDSDTLQQL  600
DSFRGMLSQF PPQTVRLKVP FSIKPWIGSE DNVGKLLMVW RFLITFTDVL GLSPVTLDEF  660
VQSLHDYDSR LLGELHIALL KSIIKDIEDV ARTPSIALGV NPGGGHPQIV EGAYAWGFNI  720
RSWQRHLNLL TWPEILRQFA LSAGFGPQLK KRNVDDSYYR NDNEGHDGEN VISTLRNGSA  780
AVNAAALMKE RGYTHRRRSR HRLTPGTVKF AAFHVLSLEG SKGLTILEVA EKIQKSGLRD  840
LTTSKTPEAS IAAALSRDTK LFERTAPSTY CVKSPYRKDP ADSEAVLSAA REKIRAFQNV  900
LSDSEAEKEA DEAERDDDSE CDDNDDDPDG DDVNTEVEDD KDPLPAVKAQ DEVPITTEVG  960
DIKTEADSVG NALNSSSSFT KSAKGVPLPS LGKSIAADTG NESPLGASSA NHEVTPDNSE  1020
NTQIDESNQV EPWVRALAEG DYCDLSVEER LNALVALVGV ATEGNSIRGV LEERLELANA  1080
LKKQMWAEVQ LDKRRSKEEF ASRMQYNSYM GLKADMYQEN NATESTSTPA CNAYKENDGH  1140
MGTINNCEIL DQHSQGNAGS ISYERNGVGQ EMMATPDASS VQQYAYADKT RSQLKLYIGH  1200
RAEQLYVYRS LPLGHDRRGN RYWQFTTSAS PNDPGSGRIF FESKDGYWRV IDSEEAFDSL  1260
VAALDTRGSR EAQLHSMLQM IEPTFKEAIK RRGASIELST GRYPKNGATD MIRANCHSGS  1320
SNSTPFSVDS ATEYSDSFKV ELGRNDFEKT AISRRADAFL KWMWRECYNQ ELTCAMKYGV  1380
KRCSELLHSC NFCYQIYLAE ERHCSSCHKT FKSIYNFSEH TTQCEEKQRT DPNWKMQIVD  1440
YSVPIGMILL KLQLASIEAS VPSEALQPFW TDVYRKSWSV KLYATKSTAE VFQLLTVLEG  1500
AIRRDRLSSD FETTSECLNS QDVAPQNPLL PAGSASVLPW VPDTTAAVMV RMLDLDSAVS  1560
YTQNQKMERD GGGFMKFPSR YTVAKSKQET TPLEPPTGSD LYGGGRWLPG SGRRGRGRGS  1620
RGGSRGGRGR SRGGRVPRGV SSSSRVEFKD DGVASDKAPR KNARRGRARG RARGRGRRTV  1680
RSRQPSEGRA RSIPKANLLG SFSMLSSSKP ATVEESPRSS GADEWGLEAR MPYTEGDENS  1740
SGSQSEDNEE NGQPMDDDYE EQVPDYSIGY SSGSRPHGMM SMMDPESDEE DEDAEGDENA  1800
EEDDADHAVD DADIEMDEDD EIVDDGDGGE MNVDEDEDAT SYSSDYSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1666	1675	RARGRARGRG
2	1666	1676	RARGRARGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G269000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969494.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A368R972	0.0	A0A368R972_SETIT; Uncharacterized protein
STRING	Si000028m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sevir.5G269000.1.p