PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G268700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 317aa    MW: 34676.9 Da    PI: 9.0902
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G268700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.19e-33662061128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd+el+ e+L+ k++ +       +   +    +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++ 
  Sevir.5G268700.1.p  66 LPAGVKFDPTDQELL-EHLEGKARPDArklhplI---DdfipTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHt 151
                         799************.99****998885564432...133333655557**********.555555677******************7444 PP

                 NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Sevir.5G268700.1.p 152 deqggETRWHKTGKTRPVFT-HGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206
                         56555778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3758225IPR003441NAC domain
PROSITE profilePS5100532.99266225IPR003441NAC domain
PfamPF023654.2E-1567206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLVTA AAVAAAKKQQ QASSHVNLIR TCPSCGHRAQ YEQLQAAATI  60
QDLPGLPAGV KFDPTDQELL EHLEGKARPD ARKLHPLIDD FIPTIEGENG ICYTHPERLP  120
GVGKDGLIRH FFHRPSKAYT TGTRKRRKVH TDEQGGETRW HKTGKTRPVF THGKLKGYKK  180
ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EEKDGELVVS KVFYQTQPRQ CGSGSATAKD  240
VVPLAASAAT DHHHHHHDGG NGGSNSMLKE AGIVDFYSPA ALIGYNQAAP NNRAAASAHL  300
MPNFEVHTAG AAGFGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G268700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549450.0BT054945.1 Zea mays full-length cDNA clone ZM_BFc0091A12 mRNA, complete cds.
GenBankBT0629760.0BT062976.1 Zea mays full-length cDNA clone ZM_BFc0013H24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969491.10.0NAC domain-containing protein 73
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLK3XK780.0K3XK78_SETIT; Uncharacterized protein
STRINGSi002301m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-123NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]