PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G266300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WOX

Protein Properties

Length: 532aa MW: 54788.6 Da PI: 7.4805

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G266300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.4	8e-16	71	131	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e+ ++ ++l ++ +++V++WFqNr+ + k+ Sevir.5G266300.1.p 71 KPRWNPRPEQIRILEAIFNSgMINPPRDEIPRIRMRLqeygQVGDANVFYWFQNRKSRSKN 131 89***************99***********************************995 PP
2	Wus_type_Homeobox	108.6	3.6e-35	70	132	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+ +P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k Sevir.5G266300.1.p 70 PKPRWNPRPEQIRILEAIFNSGMINPPRDEIPRIRMRLQEYGQVGDANVFYWFQNRKSRSKNK 132 579**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.31E-11	65	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.977	67	132	IPR001356	Homeobox domain
SMART	SM00389	5.3E-6	69	136	IPR001356	Homeobox domain
CDD	cd00086	4.30E-6	70	132	No hit	No description
Pfam	PF00046	1.8E-13	71	130	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	71	131	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MASSFNNRHW PSMFRSKHAA EQWQPQPDIS SSPPSSLLSG GGNTTNTGGS CLNKHPSSGY 60 AGGEERTPDP KPRWNPRPEQ IRILEAIFNS GMINPPRDEI PRIRMRLQEY GQVGDANVFY 120 WFQNRKSRSK NKLRAAGAAR PCPARAPARA AAVTPPPPPA PPQLLTTTQQ VQLLASPVPQ 180 AAPTSSSSSS SDRSSGSSRP AAKRAAQAMS PTAAMDLLGP LAAACPQMYY QGQPVAPPAS 240 APAHKVHDLV ASDEPIFQPW PQGCCLSAAE LAAILGGQYM HVPVPVQQQP PAALPAGAFL 300 GLCNEVTEPA ITGQRTCTTW GAGLGQYCPG GGAEHHQLGK NTDAAPAREV AHEDATKLGL 360 LQYCFGDSTA VDATAGAATT RDAAVTVATV AATATTARLT GLPASSAAPN GVVANYDLMQ 420 LQGLAADGAL GAGATTTSTG APVAVATAAV AGEQQEGAGV AALCITDSVT GRSVAHSVAA 480 ARLDVRAQFG EAAVLFRCAG ERGLDLEHVP VDASGCTVQP LQHGAFYYVL V*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MASSFNNRHW PSMFRSKHAA EQWQPQPDIS SSPPSSLLSG GGNTTNTGGS CLNKHPSSGY  60
AGGEERTPDP KPRWNPRPEQ IRILEAIFNS GMINPPRDEI PRIRMRLQEY GQVGDANVFY  120
WFQNRKSRSK NKLRAAGAAR PCPARAPARA AAVTPPPPPA PPQLLTTTQQ VQLLASPVPQ  180
AAPTSSSSSS SDRSSGSSRP AAKRAAQAMS PTAAMDLLGP LAAACPQMYY QGQPVAPPAS  240
APAHKVHDLV ASDEPIFQPW PQGCCLSAAE LAAILGGQYM HVPVPVQQQP PAALPAGAFL  300
GLCNEVTEPA ITGQRTCTTW GAGLGQYCPG GGAEHHQLGK NTDAAPAREV AHEDATKLGL  360
LQYCFGDSTA VDATAGAATT RDAAVTVATV AATATTARLT GLPASSAAPN GVVANYDLMQ  420
LQGLAADGAL GAGATTTSTG APVAVATAAV AGEQQEGAGV AALCITDSVT GRSVAHSVAA  480
ARLDVRAQFG EAAVLFRCAG ERGLDLEHVP VDASGCTVQP LQHGAFYYVL V*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G266300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055794	1e-130	BT055794.1 Zea mays full-length cDNA clone ZM_BFb0196O06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969472.1	0.0	WUSCHEL-related homeobox 7
Swissprot	Q0JKK6	1e-120	WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBL	A0A368R949	0.0	A0A368R949_SETIT; Uncharacterized protein
STRING	Si004249m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-43	homeobox-3

Link Out ? help Back to Top
Phytozome	Sevir.5G266300.1.p