PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G258300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 33028.3 Da PI: 4.3825 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.8e-20 | 92 | 142 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAa+ ++ a+ +l+g Sevir.5G258300.1.p 92 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDTAAIQLRG 142 69********.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-12 | 92 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.21E-28 | 92 | 149 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 93 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-35 | 93 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.341 | 93 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 93 | 151 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-10 | 94 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSRSRTVRIF WDDPDLTDSS GEEEGCGARR VGRMVRELPP VAVAAAPAAP LPEQCSAGDG 60 ERGRRVAGGV GPGVCSGARR RLAKGGPGAT STKFRGVRRR PWGKFAAEIR DPWRGVRVWL 120 GTFDTAEEAA RVYDTAAIQL RGPNATTNFS AANSGSGVGQ DQDPATPGYE SGAESSPAAS 180 SPTSVLRKVP SLSSLAEDSK DDSDAAPCEP EPAAAPERRS LSVLEEEELG EFVPFEDAPV 240 YATSGFWDIQ PDAGFLYAEP SSPEASWNAA ASFGPASSGE APSWAAASPT VQENDYFEDL 300 RDLFPLHPLP AIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-23 | 86 | 158 | 7 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G258300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969361.1 | 0.0 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A368RA88 | 0.0 | A0A368RA88_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb01758.1.p | 1e-154 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 1e-26 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G258300.1.p |