PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G250700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 348aa    MW: 37470.3 Da    PI: 8.5459
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G250700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15272297126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ + +tG C+yGd+C+FaHg
  Sevir.5G250700.2.p 272 FKTELCNKWEETGACPYGDQCQFAHG 297
                         79***********************9 PP
2zf-CCCH17.57.4e-06310335126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  Cr  +++  C+yG rC+F H+
  Sevir.5G250700.2.p 310 YKTQVCRMVLAGEVCPYGHRCHFRHS 335
                         99*********66**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-19266304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10268303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601271299IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10271298IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-8305337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11305335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535309337IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5309336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQEALLSPAN AGSLRSAFEL KPFAFGDQRL ASPRYLNLAC GGTGGDDALF RCSSPFSPSF  60
GFSSPSPLAT SSVSLSPSSS ASLVDDCDDA AATDAATGHR LQLARLALQY QEVADRYELC  120
LARLADAADE AAALRRENAE LRAANGDLTR RLALLSGIGK QAAAAAIADE VRRLRFSEQK  180
AVPAAKERAQ PEKLAVLPKS ISVRSNDYLK MNQPNQAPAT PAANNRKPRA SNPTKPSSRV  240
YIGDGGDKKG EEAKQQHAAG AMELEVYNQG MFKTELCNKW EETGACPYGD QCQFAHGVAE  300
LRPVIRHPRY KTQVCRMVLA GEVCPYGHRC HFRHSLTSAE RLLLPRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22272335467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G250700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421470.0BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969303.10.0zinc finger CCCH domain-containing protein 9 isoform X2
SwissprotA2ZVY51e-125C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLK3XJJ00.0K3XJJ0_SETIT; Uncharacterized protein
STRINGSi002050m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-51C3H family protein