PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G247000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 31897.4 Da PI: 8.2054 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 51 | 98 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv ++ ++G g+W+ ar g++R +k+c++rw++yl Sevir.5G247000.1.p 51 KGPWTLEEDLILVGYISEHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 98 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.8e-14 | 105 | 147 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ T+ Ed + ++++ lG++ W++I++ ++ gRt++++k++w++ Sevir.5G247000.1.p 105 GSITPAEDAAIRELHAALGNK-WSKISKLLP-GRTDNEIKNYWRT 147 5679*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.344 | 46 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 46 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.17E-30 | 49 | 145 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-13 | 50 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 51 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.97E-10 | 53 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 101 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-13 | 103 | 151 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.566 | 103 | 153 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-12 | 105 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-10 | 108 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MTGAERSTST LASACVSSVR YRTDPRTESK EMATRVAMAC GRAGDQPAVR KGPWTLEEDL 60 ILVGYISEHG EGSWDNLARA AGLNRNGKSC RLRWLNYLRP GVRHGSITPA EDAAIRELHA 120 ALGNKWSKIS KLLPGRTDNE IKNYWRTRIQ KKPAAAAKAP HQQPPAAVVS EGASSAAGDY 180 YWCGAKPDPA DQQAYWSQKA AVAAATAAAG VGSGEGVSSS TPTSQDSSTG AGDWRMQQTS 240 SCPYYSELMM SWIAGGHSET GVGVDALTTH FSSSGQFSDS FWNAVENFWE TKPVTGAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-26 | 47 | 152 | 3 | 107 | B-MYB |
1h8a_C | 9e-26 | 47 | 152 | 23 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G247000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728193 | 1e-121 | KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969273.1 | 1e-173 | transcription factor MYB21 | ||||
TrEMBL | A0A368R8G0 | 0.0 | A0A368R8G0_SETIT; Uncharacterized protein | ||||
STRING | Si003841m | 1e-172 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13240 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 5e-52 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G247000.1.p |