PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G245900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 92aa    MW: 10547.6 Da    PI: 7.6858
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G245900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.7e-121562347
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                         WT +Ed+ + +a + + ++   +W+ +ar+mg +R+ ++++ r+q +
  Sevir.5G245900.1.p 15 QWTRQEDKMFERALAVYDTDtpdRWHNVARYMGGTRSIEELRRRYQLL 62
                        7********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.526863IPR017877Myb-like domain
SMARTSM007171.3E-101265IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-131470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-51464IPR009057Homeodomain-like
PfamPF002499.3E-101561IPR001005SANT/Myb domain
CDDcd001672.76E-81663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASNSTWGSS SSSDQWTRQE DKMFERALAV YDTDTPDRWH NVARYMGGTR SIEELRRRYQ  60
LLVRDVAQIE SDGVPFHWYA AAPPPSRLQR G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-19979473RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G245900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969264.12e-62protein RADIALIS-like 3
SwissprotQ1A1732e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLK3XNP84e-61K3XNP8_SETIT; Uncharacterized protein
STRINGSi003521m7e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-24RAD-like 6