PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G234400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 387aa    MW: 42464.4 Da    PI: 6.1902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G234400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.1e-12157182227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C f++rt tCkyG+ CkF H++
  Sevir.5G234400.1.p 157 GEKDCAFYMRTRTCKYGEACKFDHPQ 182
                         7889********************97 PP
2zf-CCCH20.11.1e-06206232127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++  ++ tC++ +rCkF+H++
  Sevir.5G234400.1.p 206 PGEPDCPYLVKSNTCRFKSRCKFNHPK 232
                         5789*********************96 PP
3zf-CCCH34.53.4e-11277302227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++  C+f+++tG+Cky  +CkF+H++
  Sevir.5G234400.1.p 277 GETVCDFYMKTGFCKYSQKCKFHHPM 302
                         6789********************95 PP
4zf-CCCH35.31.9e-11333356427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         e C f++r+GtC+yG+ CkF H+p
  Sevir.5G234400.1.p 333 EACAFYMRSGTCRYGAHCKFDHPP 356
                         78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.7E-4155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413155183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5156182IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9157182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4161181IPR000571Zinc finger, CCCH-type
SMARTSM003560.53205232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671205233IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4207232IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732275303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7276304IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9277302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5280300IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6329356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065329357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6332357IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9333356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5333354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSDPLYPYSR GALPGGDGAL PPPRYSDLEV DLIAARYTGT PPPYPSSADV SAFDSHVGAF  60
DYGVGAFDSH VGAFDSGVGA FDSHVGAFDS HIGAFDSRVG AFDSRFGARR SAEALYHQSF  120
MGSHSTVAQN EALYSPNTMA KRPRLESSLP IYPQRPGEKD CAFYMRTRTC KYGEACKFDH  180
PQWVPEGGVP NWKEVPNVED YYPERPGEPD CPYLVKSNTC RFKSRCKFNH PKEKVNALEA  240
GTDNEHSLIA DSAILPVRPS EPVCSIEPVP IYPQRPGETV CDFYMKTGFC KYSQKCKFHH  300
PMNRSEPGAN GNWDPEQPVT LTLAGLPRRE GAEACAFYMR SGTCRYGAHC KFDHPPPQEA  360
ISKLQAAGKE DEEKKEGEAK EGSVVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G234400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0183961e-147BT018396.1 Zea mays clone EL01N0320H11.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969171.10.0zinc finger CCCH domain-containing protein 8
SwissprotQ5ZDJ67e-99C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLK3XHL70.0K3XHL7_SETIT; Uncharacterized protein
STRINGSi000968m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.17e-79floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]