PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G213900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 318aa    MW: 33043.6 Da    PI: 9.1051
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G213900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29128187159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+kkv+r+a+d +v+++tY g Hnh+
  Sevir.5G213900.1.p 128 VNDGCQWRKYGQKVAKGNPCPRAYYRCTGApDCPVRKKVQRCAQDMSVLVTTYDGAHNHP 187
                         58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-30115187IPR003657WRKY domain
SuperFamilySSF1182901.01E-25122188IPR003657WRKY domain
PROSITE profilePS5081126.291123189IPR003657WRKY domain
SMARTSM007741.3E-34128188IPR003657WRKY domain
PfamPF031062.3E-25129187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MELKTLVFKE LMGGPEKINL VDEPAGPFLT LSLGPTNATG ASCRATGRDG IDAKLRAHAG  60
DDATADLALG LRCDSGEPQV LRAVVSGTKR PRAASDDHGD SKKALLPPQG RPAADRVSFR  120
ARCSAATVND GCQWRKYGQK VAKGNPCPRA YYRCTGAPDC PVRKKVQRCA QDMSVLVTTY  180
DGAHNHPLTP YAAAMASAIL ASSLASAPRD ATGTATTADW GRANEEAPLL ARPVAVLPPR  240
GYPSSGVVAV SGGAPAAAPS QNAVPMANIM QKAVADPKFR AAVMAAVASY VGEQCGGRSI  300
NDLLTYWHLP TNPSDVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-211281901475WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G213900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701689.10.0probable WRKY transcription factor 31
TrEMBLK3XK720.0K3XK72_SETIT; Uncharacterized protein
STRINGSi002295m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-41WRKY DNA-binding protein 9