PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G208500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 393aa    MW: 42006.4 Da    PI: 8.7615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G208500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06628123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++Cgk F r  nL+ H r H
  Sevir.5G208500.2.p  6 FVCEICGKGFQRDQNLQLHRRGH 28
                        89*******************88 PP
2zf-C2H2120.00066114132523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr++++ +H   +
  Sevir.5G208500.2.p 114 DCGTVFSRRDSFITHRAFC 132
                         9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.21E-8528No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5628IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.614628IPR007087Zinc finger, C2H2
SMARTSM003550.012628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304979IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.21E-879104No hitNo description
SMARTSM0035516084104IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRGTG KEAPKKKVYV CPEASCVHHD  60
PARALGDLTG IKKHFFRKHG EKKWKCDKCS KKYAVHSDWK AHSKICGTRE YKCDCGTVFS  120
RRDSFITHRA FCDALTEESA KAIGFNAMAA AAPAHHHHPL LFSPPPQVMQ QHQVQDLAAL  180
QENHHQELMQ PPQPQQHCNY AMKTEMPPWP AMTYDHHAHP LLQPLCHAAA QSSATSAPPP  240
QLPAASAHLS ATALLQKAAQ MGATIAGAGA GGAGAHYTQM AGPATSAPGS ATFGLGLPGL  300
NAQQPARGRG GEDGGGGAGA GRGGDGMTRD FLGLRAFSHR EILGLAGFDS SCMGAVAANA  360
DMGCYEPQQH AQAPAQQQQS SNEPWHGMGS HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3480141364Zinc finger protein JACKDAW
5b3h_F5e-3480141364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G208500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569260.0EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969020.10.0protein indeterminate-domain 7
SwissprotQ8H1F52e-99IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLK3XHY20.0K3XHY2_SETIT; Uncharacterized protein
STRINGSi001504m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-77indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]