PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G208400.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C3H

Protein Properties

Length: 684aa MW: 72948.4 Da PI: 5.3383

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G208400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.7	2e-08	476	497	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++ +G C +GdrCkF+H+ Sevir.5G208400.3.p 476 ECHNYKNNGMCIRGDRCKFSHV 497 6********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.784	417	444	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.37E-5	418	442	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0058	418	443	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.971	446	473	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.9E-4	446	472	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.2E-5	447	471	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.023	474	498	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-5	476	497	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.577	476	499	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-4	477	496	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MEDALATSPL APPPAPLAAA AVLTRRRSHL DSASYRTLSR LFSHCLHLHP SPREGTALPE 60 AEPAAANPTG GDSGDSLQVP RGADFDPLKN VEKEAADAGG PPLYGTVSPA REQPAAANPT 120 GNPCEAGAPQ RSHDDANEVV AVESTCVNTG AGVDESGIGA ELVDVGDDAL KSVKACLEMT 180 EVDESVEGAL GNEDGQLLLD AMMTNFTGLI DDVGAGVVPA QPCVVSGGEL QNSKASEDLN 240 QSVGRIEDGE PVTNLDHELN GDGGFEEGEI EGEFQALDSE ESGDSELGDN DDSEEKLGGD 300 SVSRGSGANK SSDHGTQFGN LHSTPEIIGN GHLTLNNDGV RGGAQISVTR APAVSYDEIV 360 DWNGTPLPDN MAPNPGKKRK RSMTEERKAK KTENKRKKRA QQRIADGVNR PKIQHVMKPK 420 KPCHFYDHGK CQQGNKCKFS HDFTPSTKSK PCKHFACGSC LKGDDCPYDH ELSKYECHNY 480 KNNGMCIRGD RCKFSHVMQT TEGTPTQDAK PSDASLAYEK TNLREHTSSQ KTSTVHNGEP 540 VTSAPTKQQC SILKNLAGFS INSQNVSNRI PKGVQFLPID KSGSNLSSLR LGALSIEKPR 600 NANATQHQYL REHEAERQKI AKQNGQESLL DEKNSSNEAT VHPFSDPKKA TLPISSTATS 660 VHTQPEVSEA SRILQEFLFG AGS*

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MEDALATSPL APPPAPLAAA AVLTRRRSHL DSASYRTLSR LFSHCLHLHP SPREGTALPE  60
AEPAAANPTG GDSGDSLQVP RGADFDPLKN VEKEAADAGG PPLYGTVSPA REQPAAANPT  120
GNPCEAGAPQ RSHDDANEVV AVESTCVNTG AGVDESGIGA ELVDVGDDAL KSVKACLEMT  180
EVDESVEGAL GNEDGQLLLD AMMTNFTGLI DDVGAGVVPA QPCVVSGGEL QNSKASEDLN  240
QSVGRIEDGE PVTNLDHELN GDGGFEEGEI EGEFQALDSE ESGDSELGDN DDSEEKLGGD  300
SVSRGSGANK SSDHGTQFGN LHSTPEIIGN GHLTLNNDGV RGGAQISVTR APAVSYDEIV  360
DWNGTPLPDN MAPNPGKKRK RSMTEERKAK KTENKRKKRA QQRIADGVNR PKIQHVMKPK  420
KPCHFYDHGK CQQGNKCKFS HDFTPSTKSK PCKHFACGSC LKGDDCPYDH ELSKYECHNY  480
KNNGMCIRGD RCKFSHVMQT TEGTPTQDAK PSDASLAYEK TNLREHTSSQ KTSTVHNGEP  540
VTSAPTKQQC SILKNLAGFS INSQNVSNRI PKGVQFLPID KSGSNLSSLR LGALSIEKPR  600
NANATQHQYL REHEAERQKI AKQNGQESLL DEKNSSNEAT VHPFSDPKKA TLPISSTATS  660
VHTQPEVSEA SRILQEFLFG AGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	381	KKRKRS
2	378	398	RKRSMTEERKAKKTENKRKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G208400.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969019.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_022682856.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_022682857.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_022682858.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	1e-175	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	K3XF83	0.0	K3XF83_SETIT; Uncharacterized protein
STRING	Si000552m	0.0	(Setaria italica)

Link Out ? help Back to Top
Phytozome	Sevir.5G208400.3.p

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]