PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G147800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TCP | ||||||||
Protein Properties | Length: 448aa MW: 46224.3 Da PI: 7.0967 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.7 | 2.1e-34 | 87 | 184 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaessss 80 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l + ++++s++ ++s ++ Sevir.5G147800.1.p 87 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptatvanaAAPPSSSTHPDSAEN 177 79**************************************************************887777777665444444443333333 PP TCP 81 sas.nss 86 s++ ++ Sevir.5G147800.1.p 178 SDDqAQA 184 3320222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-31 | 87 | 184 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.257 | 89 | 147 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MGDAGQSHHH HHGFQPQLLS FGGVGGQHHV HQFAAQAPAA ASHSRSRGGA GAGGEIVAAT 60 PASHSRVRGG GGGEIVAVQG GHIVRSTGRK DRHSKVCTAR GPRDRRVRLS AHTAIQFYDV 120 QDRLGYDRPS KAVDWLIKNA KDAIDKLEVL PAWQPTATVA NAAAPPSSST HPDSAENSDD 180 QAQAITVAHT SFDFPGAGGA SGGAGGTGFL PASLDSDSIA DTIKSFFPMA GTAGGEASSS 240 TAAAQSSAMG FQSYTPDLLS RTGSHSQELR LSLQSHPDPM FQQQQDRSHG HGGNGSAQQA 300 LFPGAASYSF GGGGAMWAEQ AQGQQRMVPW NVPDPGGGST GGYLFNVSQQ AAHMQAALAG 360 QSQFFFQRGP LQSSNQPSDR GWPETVEADN PMQHHQGQGG LSPTVFAPGV GFPGFRIPTR 420 IQGDEEHNGG GGNGDKTPPS VSSASHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 94 | 147 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 94 | 147 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G147800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955708 | 0.0 | EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968615.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_022682845.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | Q8LT07 | 1e-180 | PCF5_ORYSJ; Transcription factor PCF5 | ||||
TrEMBL | A0A368R4V0 | 0.0 | A0A368R4V0_SETIT; Uncharacterized protein | ||||
STRING | Si004564m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-55 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G147800.1.p |