PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G135800.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 466aa    MW: 49372.4 Da    PI: 8.9272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G135800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-067294123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ Cgk F r  nL+ H r H
  Sevir.5G135800.5.p 72 YVCEVCGKGFQRDQNLQLHRRGH 94
                        9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-77194No hitNo description
Gene3DG3DSA:3.30.160.604.4E-67294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00817294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8227294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM0035544114144IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.83E-7144169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MMLKDLAAIQ QQQLAADENM SNLTSASGDQ TSVSSHPLPP PAKKKRSLPG NPDPDAEVIA  60
LSPRTLMATN RYVCEVCGKG FQRDQNLQLH RRGHNLPWKL KQRNPKEVVR KKVYVCPEAG  120
CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CDRCAKRYAV HSDWKAHSKV CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESARAVTA AAAAAAVAAG QHHQTHPGML GDGVHLPAVL  240
DHPSQPPLGG MSLQEMCLKR EQFAPSWLTP QQQQHLEMGN PPSVFGSQEY MTGSSTPDSN  300
AQPAAGLGFG FSPPPTASAA HMSATALLQK AAQMGATLSR PSNQGQMASV HSTSTTSANA  360
AAAAAGSLPT TGAHTGALGF GASHHFGGDR ERSSRTDRDA GSGGNAAGAA AGGGNDGLTR  420
DFLGLRAFSH GDILSMAGFD PCMSPASPAA YEQQGHQMSS KQWHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33145206364Zinc finger protein JACKDAW
5b3h_F4e-33145206364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198111KLKQRNPKEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G135800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968516.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-122IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLK3XHG30.0K3XHG3_SETIT; Uncharacterized protein
STRINGSi001334m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-108indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]