PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G133600.13.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 438aa MW: 49107.8 Da PI: 7.601 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.3 | 1.3e-35 | 44 | 186 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+el+ e+L+ kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Sevir.5G133600.13.p 44 LPAGVKFDPTDQELI-EHLESKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqt 129 799************.99******999677544333..3444433445**********.555666799******************7566 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Sevir.5G133600.13.p 130 ecdvhKGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 186 6664433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-39 | 39 | 205 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.09 | 44 | 205 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-16 | 45 | 186 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MNRGHSSSSS KLINEKLEEH RISTAKHCPH CGEKIDSKPD WVGLPAGVKF DPTDQELIEH 60 LESKVKDEGS RSHPLIDEFI PTIDGEDGIC YTHPEKLPGV TRDGLSKHFF HRPSKAYTTG 120 TRKRRKIQTE CDVHKGETRW HKTGKTRPVM VNGRQKGCKK ILVLYTNFGK HRKPEKTNWV 180 MHQYHLGDLE EEKEGELVVC KIFYQTQPRQ CSWSSERGAA AAAAVAAATA QEQRRKDSGS 240 GSCSSRDHEV SATSFPAGYT VTTAVEMQQQ PADHFSFVPF RKTFDQEVGI GGDQVPSNQL 300 GRSEQHHAGQ EQQPHRPVLA TTAVPATAFL ISRPSNPVST IVPPAMQHAS VVLDHDQFHV 360 PAILLHHHDK FQNLQQQHQH QQQQPQQKLD RRSAGLEELI MGCTSSTSTK GETSLPQSQE 420 TEWPYPYWPP DNQDHHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-12 | 42 | 186 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G133600.13.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017005 | 0.0 | KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968498.1 | 0.0 | uncharacterized protein LOC101755562 isoform X2 | ||||
Swissprot | Q9M0F8 | 1e-148 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A368R4R0 | 0.0 | A0A368R4R0_SETIT; Uncharacterized protein | ||||
STRING | Si001527m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-115 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G133600.13.p |
Publications ? help Back to Top | |||
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