PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.5G127800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 209aa MW: 22263.8 Da PI: 4.5834 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.1 | 1e-14 | 88 | 169 | 19 | 99 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprd 99 +lP+ r+k+i+++d d+k++++ea l++ a elf+ l+ + a rr+++ + + aa ++ + dfl+d + Sevir.5G127800.1.p 88 PALPVGRVKRIMRVDRDIKKVTSEATLLIAAATELFLGSLAAGAHTAAARRGRRAVRAAHVRAAArAHRPTADFLLDCLHAE 169 579**********************************************************88761566799*****98766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.7E-18 | 88 | 151 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.72E-16 | 89 | 166 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-13 | 90 | 151 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MATAAAAAVD EPTVAMEEEL RKEGELVEEP TEAMEQVAED REEIGGPAEA TEQVEEEREE 60 ATDPAEPMEQ VGEDREEAEA EEGASLRPAL PVGRVKRIMR VDRDIKKVTS EATLLIAAAT 120 ELFLGSLAAG AHTAAARRGR RAVRAAHVRA AARAHRPTAD FLLDCLHAEE EAPRARPVAG 180 SAGGGGGREA KPLPRGTRRI DAFFQKVT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.5G127800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU970773 | 1e-132 | EU970773.1 Zea mays clone 350567 histone-like transcription factor and archaeal histone family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968444.1 | 1e-139 | DNA polymerase epsilon subunit C | ||||
TrEMBL | K3XRQ9 | 1e-138 | K3XRQ9_SETIT; Uncharacterized protein | ||||
STRING | Si004603m | 1e-139 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.5G127800.1.p |