PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G119200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 431aa    MW: 47456.9 Da    PI: 5.504
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G119200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1484.2e-15123205190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkr..tfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         ++Yn Y+ e+GF +r s+s++ k+ gei+++   fvC + g+++  +kk         + + gC a +++ +++d+ w++++++ +HnH++
  Sevir.5G119200.1.p 123 DYYNLYSWEMGFGIRYSSSQSYKKRGEIYRNmvSFVCVCGGTPDAGSKK---------SIKQGCPAFVRLLRTDDDGWYIKEFVADHNHKM 204
                         69*****************999999999875338*********998877.........999****************************99 PP

                FAR1  90 a 90 
                         +
  Sevir.5G119200.1.p 205 S 205
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-12123205IPR004330FAR1 DNA binding domain
PfamPF105513.4E-11366414IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MTPGATSVPP YRPIHRGESS ATAPPSAVVA SGESEPIVGG EACNGSSKGS AVDGKTASSC  60
SGPRKRGVKR SWKDGVGADS RAFVPGRISP LEEALRCYGD RGAGPIIAPR AGLEFDSCEE  120
AFDYYNLYSW EMGFGIRYSS SQSYKKRGEI YRNMVSFVCV CGGTPDAGSK KSIKQGCPAF  180
VRLLRTDDDG WYIKEFVADH NHKMSETCAE ISCWKSHRQI DPHTKELVKN LRANNVSLTE  240
VSCILSSFFG NNNASAVTKR ALRSLTVQNN SEKVEGDVHQ TIENDVQINR EAEDDVQKTI  300
EVFNRLHEED EGFANVVDLD EVFNRLHEED EGFANVVDLD EGGKIKAMMW TNGKSRHDYL  360
CFGDAITFDT TYRTNKYNMP FGLFVGANKH FQSVIFAGVL MLDESIKSFE WGTKDDTYRP  420
VQCDGSCIGQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G119200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682231.10.0uncharacterized protein LOC101776624 isoform X1
TrEMBLA0A368R5Q20.0A0A368R5Q2_SETIT; Uncharacterized protein
STRINGSi005043m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-30FAR1 family protein