PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G111800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 28190.4 Da PI: 5.1271 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.3e-20 | 80 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r kr +lg+f ta eAa a+++a+k+++g Sevir.5G111800.1.p 80 CPYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAAKAMYG 130 67*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-37 | 81 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 81 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 81 | 139 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.1E-14 | 81 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-30 | 82 | 140 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.6E-32 | 82 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-9 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-9 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDLGHGAQGG EGDSSGSGGQ LRKKRMRRKS TGPDSIAETI KWWKEQNQKL QDESGSRKAP 60 AKGSKKGCMA GKGGPENGNC PYRGVRQRTW GKWVAEIREP NRGKRLWLGS FPTAVEAAHA 120 YDEAAKAMYG PKARVNFPEN SADANSGCTS ALSLLASSVP AAALHGFNEK DEVESVETEV 180 HEVKAEANDD LGSIHVECKS VEVLQSEEIV LQKEGNVSYD YFNVEEVVEM IIIELNADKK 240 IEVHEECLGG DDGFSLFAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 82 | 138 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G111800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ132744 | 0.0 | HQ132744.1 Setaria italica dehydration responsive element-binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968294.1 | 0.0 | dehydration-responsive element-binding protein 2A isoform X1 | ||||
Swissprot | A2WL19 | 1e-125 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A368R3N4 | 0.0 | A0A368R3N4_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XJJ4 | 0.0 | K3XJJ4_SETIT; Uncharacterized protein | ||||
STRING | Si002067m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 2e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G111800.1.p |