PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G110700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 24041.1 Da PI: 9.9716 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4.2e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 ++rWT eE+ l +v+++G g+W+tI + R+ ++k++w++ Sevir.5G110700.2.p 5 KQRWTSEEEAALRTGVAKHGVGNWRTILNDPElssilCYRSNVDLKDKWRN 55 79******************************999*978**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.939 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.31E-16 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.26E-19 | 6 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 2.0E-19 | 120 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.62E-18 | 121 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 1.4E-13 | 122 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 25.399 | 124 | 192 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 3.5E-11 | 125 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGAPKQRWTS EEEAALRTGV AKHGVGNWRT ILNDPELSSI LCYRSNVDLK DKWRNMNVTV 60 TASSSRDKAR SAVKKTRAGP KNNDQPAAIS TVTSDADDEI VDVKPIASVS SEAWNTSNSK 120 KSQSHSRLDN IIMEAIKNLN EPTGSHRTTI ANYIEEQYWP PSDFDHLLSA KLKDLAASGK 180 LIKVNRKYRI APSSPRLEGR SPKMLLLEEN WLASQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G110700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY280630 | 1e-179 | AY280630.1 Zea mays single myb histone 5 (Smh5) mRNA, complete cds. | |||
GenBank | BT037297 | 1e-179 | BT037297.1 Zea mays full-length cDNA clone ZM_BFb0161M01 mRNA, complete cds. | |||
GenBank | BT086212 | 1e-179 | BT086212.1 Zea mays full-length cDNA clone ZM_BFc0130J16 mRNA, complete cds. | |||
GenBank | DQ245014 | 1e-179 | DQ245014.1 Zea mays clone 12204 mRNA sequence. | |||
GenBank | JX469911 | 1e-179 | JX469911.1 Zea mays subsp. mays clone UT3159 MYB-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968284.1 | 1e-154 | single myb histone 5 | ||||
Refseq | XP_004968285.1 | 1e-154 | single myb histone 5 | ||||
Refseq | XP_022682871.1 | 1e-154 | single myb histone 5 | ||||
Swissprot | C0HIA3 | 1e-118 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | K3XKF2 | 1e-153 | K3XKF2_SETIT; Uncharacterized protein | ||||
STRING | Si002372m | 1e-154 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-55 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G110700.2.p |
Publications ? help Back to Top | |||
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