PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G109300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-X1
Protein Properties Length: 935aa    MW: 102350 Da    PI: 8.4809
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G109300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.35.2e-06282299118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG H+C   CH GpCppC
  Sevir.5G109300.1.p 282 CGLHRCPVNCHDGPCPPC 299
                         ****************** PP
2zf-NF-X119.62.1e-06389408119
            zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                         CG+H+C + CH+GpC++ C+
  Sevir.5G109300.1.p 389 CGRHRCPERCHRGPCDEtCR 408
                         *******************8 PP
3zf-NF-X117.41e-05442461120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+H C++ C+ G+CppC++
  Sevir.5G109300.1.p 442 CGRHACKRRCCAGDCPPCSE 461
                         ******************85 PP
4zf-NF-X120.79e-07469488120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+HkC ++CH+G C pCp+
  Sevir.5G109300.1.p 469 CGNHKCLSPCHRGACSPCPL 488
                         ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500898.55127180IPR001841Zinc finger, RING-type
PROSITE patternPS013590127179IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.008229247IPR000967Zinc finger, NF-X1-type
PfamPF014220.0091230246IPR000967Zinc finger, NF-X1-type
CDDcd060085.31E-9272320No hitNo description
PfamPF014221.2E-4282299IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013282301IPR000967Zinc finger, NF-X1-type
CDDcd060086.45E-7325365No hitNo description
PfamPF014222.9329353IPR000967Zinc finger, NF-X1-type
SMARTSM004380.027335354IPR000967Zinc finger, NF-X1-type
CDDcd060083.32E-9379428No hitNo description
PfamPF014228.5E-4389408IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0029389409IPR000967Zinc finger, NF-X1-type
CDDcd060083.45E-9432480No hitNo description
PfamPF014220.0015442460IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0069442461IPR000967Zinc finger, NF-X1-type
CDDcd060081.79E-10459507No hitNo description
PfamPF014226.3E-5469487IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0083469488IPR000967Zinc finger, NF-X1-type
SMARTSM0043893532555IPR000967Zinc finger, NF-X1-type
PfamPF014225.8544554IPR000967Zinc finger, NF-X1-type
PfamPF014220.54645655IPR000967Zinc finger, NF-X1-type
SMARTSM00438110645684IPR000967Zinc finger, NF-X1-type
PfamPF014220.28697714IPR000967Zinc finger, NF-X1-type
SMARTSM004380.05697715IPR000967Zinc finger, NF-X1-type
PfamPF0142269760774IPR000967Zinc finger, NF-X1-type
SMARTSM004381760781IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MPSSYAAAAA GSSSRKTNRV PTAAAAGSSS RKPNLTSTAA AATARPRPPA PSPSPAPAPP  60
AANPTAVSDS DPSSYSSSSG DEADLTASDS ATASVVSAYL SVAGEGADLS KVGIFLSSAA  120
RRRSPPCLIC FDPIRPSDPV WSCSSSCFAI LHLPCIQSWA HQSASGAAVP CPTWGCPKCR  180
FAYPKSQTPT SYLCFCSKTA DPAPDPWILP HSCGDVCGRR LNANLDSGCE HTCLLLCHPG  240
PCPPCPAVVP NAPCFCGAHW EPRRCAHQRY SCAGKCNKRL SCGLHRCPVN CHDGPCPPCA  300
VRGKHKCECG ETMEEKLCSE RVFQCKRECG GMLDCRKHKC ERGCHGGKCG ECPLRGRRTC  360
PCGKKDYPKL ECDAEAATCG STCEKVLGCG RHRCPERCHR GPCDETCRLV ITKSCRCGGL  420
KKEVPCYQEL TCERKCQRLR NCGRHACKRR CCAGDCPPCS ETCDRKLRCG NHKCLSPCHR  480
GACSPCPLMK TISCACGKTC FEVPCGTEKN QKPQKCSKKC NIPRLCRHKL ECRVIFCLLL  540
RPHKCHYGAC PPCKLTCGEE LSCGHICKER CHGPISPPNP EFTLKPTKKK MEKHIECTPG  600
TLCPPCKEVV VVPCFGQHLG QERAMPCSKW RPFPCQNLCG NPLLCGNHYC TKSCHVLEVP  660
LNQPEGDPLP SVSKESTLAE PCEQCNLPCQ RVREPSCSHR CPLRCHPSDC PPCKVLVKKP  720
CHCGAMVHAF ECVYFNNLKA KEQVKVRSCG GPCHRKLPNC SHLCSEVCHP GTCPSVDQCM  780
KKVNVRCACN TLKQEWICQD VLKEYRNSGR DPKEVPKSQF GAGLLACGED CKKKVKVQDS  840
ELHLRKTQEN KIPAMEVANV PKRRKRRDRG QEVEVSKFQE VKTYVLRVLL IIFLSMIIAA  900
GLYLLWKGIF RLSDWMNEME EQRTSRRHPR GAML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1860866PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G109300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666630.0BT066663.1 Zea mays full-length cDNA clone ZM_BFb0042A15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968270.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLK3XEA60.0K3XEA6_SETIT; Uncharacterized protein
STRINGSi000223m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors