PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G087600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 332aa    MW: 35554.9 Da    PI: 4.6231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G087600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39e-14117155346
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                         y+GVr +k +g+W+AeIr  +     + kr +lg+f+t  +Aa aa
  Sevir.5G087600.1.p 117 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDT-AGAASAA 155
                         9*****99.**********55.....45**********.7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-14116165IPR016177DNA-binding domain
PfamPF008473.1E-8116155IPR001471AP2/ERF domain
SMARTSM003801.4E-12116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-18116167IPR001471AP2/ERF domain
PROSITE profilePS5103216.924116174IPR001471AP2/ERF domain
PRINTSPR003677.8E-8117128IPR001471AP2/ERF domain
CDDcd000181.05E-15117148No hitNo description
PRINTSPR003677.8E-8139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAPLNHQQML IKKALAKKPK TKRISGFGLK PSAALLKARP QMQPPAPVQP RRRVRVLFED  60
PDATDSDSDD EEAGGPTGPV KSKRFSFEMF VGKAPPKPVL PAATVAASTS GGSPESYRGV  120
RLRKWGKWAA EIRNPFTGKR QWLGTFDTAG AASAAYLSAS RSFADEKRRR RGQPVPASSP  180
ASSASATPTA SSSSSTSAAP FAHPSPSSVL EATKPALKAE SPEPVATPIL PSTEAAQLPD  240
DPEFYQDLLR GLQLPDIDPM DFRAGLDALD VSDAPFCLDD DQDLLFGDFA DEELDEIDLD  300
LDDINDVFPE IPGCDLGRGM DDFLQTVDFC V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G087600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968058.10.0ethylene-responsive transcription factor ERF118
TrEMBLK3XJW30.0K3XJW3_SETIT; Uncharacterized protein
STRINGSi002186m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.12e-11related to AP2 2