PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G071600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 346aa MW: 37960.5 Da PI: 9.3068

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G071600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.2e-52	19	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+dee++++yLk+kv+++++++ ++i evd++++ePw+L k+k ++kewyfF +d+ky+tgkr+nratk gyWkatgkd+e Sevir.5G071600.1.p 19 LPPGFRFYPSDEEIITFYLKPKVHQSNFSC-TAIGEVDLNRIEPWELSGKAKMGDKEWYFFYLKDRKYPTGKRTNRATKGGYWKATGKDRE 108 79**************************.88**********999999********************************** PP NAM 92 vlskkgel.....vglkktLvfykgrapkgektdWvmheyrle 129 ++++ +++ vg+kktLvfykgrap+g+ktdWvmhe+rle Sevir.5G071600.1.p 109 IYRAAKKDelpllVGMKKTLVFYKGRAPTGKKTDWVMHEFRLE 151 8555578999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-58	12	186	IPR003441	NAC domain
PROSITE profile	PS51005	56.452	19	186	IPR003441	NAC domain
Pfam	PF02365	2.3E-26	20	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGGQKVQPKG MSIKDGLQLP PGFRFYPSDE EIITFYLKPK VHQSNFSCTA IGEVDLNRIE 60 PWELSGKAKM GDKEWYFFYL KDRKYPTGKR TNRATKGGYW KATGKDREIY RAAKKDELPL 120 LVGMKKTLVF YKGRAPTGKK TDWVMHEFRL EGTNKVPCPA SSSTSTTTIK SSSSEDEWVV 180 CRVFDKTTRV KREPALPLFN VAMTGGGIDQ SSISMPMPLQ FSMLSDFTMD PAASYYSTVD 240 ARSLAVPPVM PPLSGMGNIG LQVASTLFGN SMVVAPPMSI YHQMGMGAEG ASSFLGASKS 300 GPSLMVSQKD TGVDHDQANA DEISQMISAN PESVATKDMD GIWKY*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGGQKVQPKG MSIKDGLQLP PGFRFYPSDE EIITFYLKPK VHQSNFSCTA IGEVDLNRIE  60
PWELSGKAKM GDKEWYFFYL KDRKYPTGKR TNRATKGGYW KATGKDREIY RAAKKDELPL  120
LVGMKKTLVF YKGRAPTGKK TDWVMHEFRL EGTNKVPCPA SSSTSTTTIK SSSSEDEWVV  180
CRVFDKTTRV KREPALPLFN VAMTGGGIDQ SSISMPMPLQ FSMLSDFTMD PAASYYSTVD  240
ARSLAVPPVM PPLSGMGNIG LQVASTLFGN SMVVAPPMSI YHQMGMGAEG ASSFLGASKS  300
GPSLMVSQKD TGVDHDQANA DEISQMISAN PESVATKDMD GIWKY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-47	17	192	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-47	17	192	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-47	17	192	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-47	17	192	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-47	17	192	15	171	NAC domain-containing protein 19
4dul_B	2e-47	17	192	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.
UniProt	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:9351240, PubMed:15295076, PubMed:20113437, PubMed:21303842). Regulates also genes during seed germination (PubMed:20113437). Regulates positively aging-induced cell death (PubMed:19229035). Involved in age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Antagonizes GLK1 and GLK2 transcriptional activity, shifting the balance from chloroplast maintenance towards deterioration during leaf senescence (PubMed:23459204). Promotes the expression of senescence-associated genes, including ENDO1/BFN1, SWEET15/SAG29 and SINA1/At3g13672, during senescence onset (PubMed:23340744). {ECO:0000269\|PubMed:15295076, ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:21303842, ECO:0000269\|PubMed:23340744, ECO:0000269\|PubMed:23459204, ECO:0000269\|PubMed:9351240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G071600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: High levels during senescence (e.g. age-, salt- and dark-related) (PubMed:19229035, PubMed:20113437, PubMed:21511905, PubMed:22930749). By salt stress in an ethylene- and auxin-dependent manner (PubMed:16359384, PubMed:19608714, PubMed:20113437, PubMed:20404534). Induced by H(2)O(2) (PubMed:20404534). Accumulates in response to abscisic acid (ABA), ethylene (ACC) and auxin (NAA) (PubMed:16359384, PubMed:19608714). Repressed by high auxin (IAA) levels (PubMed:21511905). Age-related resistance (ARR)-associated accumulation (PubMed:19694953). Repressed by miR164 (PubMed:19229035). {ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19608714, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:20404534, ECO:0000269\|PubMed:21511905, ECO:0000269\|PubMed:22930749}.
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682349.1	0.0	protein CUP-SHAPED COTYLEDON 1
Swissprot	Q9FKA0	2e-69	NAC92_ARATH; NAC domain-containing protein 92
Swissprot	Q9FLJ2	5e-69	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K3XJK1	0.0	K3XJK1_SETIT; Uncharacterized protein
STRING	Si002074m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	4e-71	NAC domain containing protein 6

Link Out ? help Back to Top
Phytozome	Sevir.5G071600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Manacorda CA, et al. Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes. Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98 [PMID:23945002] Khan M,Rozhon W,Poppenberger B The role of hormones in the aging of plants - a mini-review. Gerontology, 2014. 60(1): p. 49-55 [PMID:24135638] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bohner A,Kojima S,Hajirezaei M,Melzer M,von Wirén N Urea retranslocation from senescing Arabidopsis leaves is promoted by DUR3-mediated urea retrieval from leaf apoplast. Plant J., 2015. 81(3): p. 377-87 [PMID:25440717] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Kim H, et al. Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(33): p. 8448-8453 [PMID:30065116]